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Francois2005 Mixed Feedback Loop Lab

About lab

Paul François & Vincent Hakim. It can be used to explore systemsbiology fran ois2005 mixed feedback loop dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagefrancois2005-mixed-feedback-loop-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_g_b",
        "label": "Initial Model State G B",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.initial_model_state_g_b",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `gB`."
      },
      {
        "name": "initial_model_state_r_b",
        "label": "Initial Model State R B",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.initial_model_state_r_b",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `rB`."
      },
      {
        "name": "initial_ag_b",
        "label": "Initial Ag B",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.initial_ag_b",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AgB`."
      },
      {
        "name": "initial_model_state_ab",
        "label": "Initial Model State Ab",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.initial_model_state_ab",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AB`."
      },
      {
        "name": "initial_model_state_a",
        "label": "Initial Model State A",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.initial_model_state_a",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `A`."
      },
      {
        "name": "initial_model_state_b",
        "label": "Initial Model State B",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.initial_model_state_b",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `B`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.species_labels"
      },
      {
        "name": "g_b",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.g_b"
      },
      {
        "name": "r_b",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.r_b"
      },
      {
        "name": "ag_b",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.ag_b"
      },
      {
        "name": "model_state_ab",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.model_state_ab"
      },
      {
        "name": "model_state_a",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.model_state_a"
      },
      {
        "name": "model_state_b",
        "maps_to": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.model_state_b"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Francois2005 Mixed Feedback Loop Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model",
      "alias": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model_state"
      ],
      "from": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model_summary"
      ],
      "from": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model_species_labels"
      ],
      "from": "systemsbiology_sbml_fran_ois2005_mixed_feedback_loop_two_gene_networ_biomd0000000539_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Paul François & Vincent Hakim. It can be used to explore systemsbiology fran ois2005 mixed feedback loop dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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