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Li2019 - Neurogranin stimulates Ca/calmodulin-dependent kinase II by inhibiting Calcineurin Lab

About lab

Clean Biosimulant lab for calcium and second-messenger signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageli2019-neurogranin-stimulates-ca-calmodulin-dependent-kinase-ii
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicalcium-signalingneurosciencephysiologyvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_kd_calcium_n_ca2_calcium_level",
        "label": "Kd calcium N Ca2 calcium",
        "maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.initial_kd_calcium_n_ca2_calcium_level",
        "description": "Kd calcium N Ca2 calcium source parameter. Maps to SBML symbol `parameter_6` and preserves the bundled default."
      },
      {
        "name": "initial_kd_calcium_n_rr_level",
        "label": "Kd calcium N RR",
        "maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.initial_kd_calcium_n_rr_level",
        "description": "Kd calcium N RR source parameter. Maps to SBML symbol `Kd_PP2BCa2_RR` and preserves the bundled default."
      },
      {
        "name": "initial_kon_calcium_n_rr_level",
        "label": "Kon calcium N RR",
        "maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.initial_kon_calcium_n_rr_level",
        "description": "Kon calcium N RR source parameter. Maps to SBML symbol `kon_PP2BCa2` and preserves the bundled default."
      }
    ],
    "outputs": [
      {
        "name": "calcium_m_rr_0_0",
        "label": "calcium M RR 0 0",
        "maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.calcium_m_rr_0_0",
        "description": "calcium M RR 0 0. Maps to SBML symbol `cam_RR_0_0` and is emitted in native SBML units."
      },
      {
        "name": "calcium_m_rr_0_calcium_nca4",
        "label": "calcium M RR 0 calcium Nca4",
        "maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.calcium_m_rr_0_calcium_nca4",
        "description": "calcium M RR 0 calcium Nca4. Maps to SBML symbol `cam_RR_0_PP2BCa2` and is emitted in native SBML units."
      },
      {
        "name": "calcium_m_rr_0_calcium_mkii",
        "label": "calcium M RR 0 calcium MKII",
        "maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.calcium_m_rr_0_calcium_mkii",
        "description": "calcium M RR 0 calcium MKII. Maps to SBML symbol `cam_RR_0_CaMKII` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "calcium-signaling",
    "neuroscience",
    "physiology"
  ],
  "title": "Li2019 - Neurogranin stimulates Ca/calmodulin-dependent kinase II by inhibiting Calcineurin Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model",
      "alias": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model_state"
      ],
      "from": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model_summary"
      ],
      "from": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model_species_labels"
      ],
      "from": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for calcium and second-messenger signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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