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Url Xml 3 Lab

About lab

This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2011 The BioModels.net Team.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageurl-xml-3-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_decarb_sam",
        "label": "Initial Decarb Sam",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_decarb_sam",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Decarb_SAM`."
      },
      {
        "name": "initial_pfs_mrna",
        "label": "Initial Pfs MRNA",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_pfs_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pfs_mRNA`."
      },
      {
        "name": "initial_lux_s_mrna",
        "label": "Initial Lux S MRNA",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_lux_s_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `LuxS_mRNA`."
      },
      {
        "name": "initial_pfs_gene",
        "label": "Initial Pfs Gene",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_pfs_gene",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `pfs_gene`."
      },
      {
        "name": "initial_lux_s_gene",
        "label": "Initial Lux S Gene",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_lux_s_gene",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `LuxS_gene`."
      },
      {
        "name": "initial_nutrients",
        "label": "Initial Nutrients",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_nutrients",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Nutrients`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.species_labels"
      },
      {
        "name": "decarb_sam",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.decarb_sam"
      },
      {
        "name": "pfs_mrna",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.pfs_mrna"
      },
      {
        "name": "lux_s_mrna",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.lux_s_mrna"
      },
      {
        "name": "pfs_gene",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.pfs_gene"
      },
      {
        "name": "lux_s_gene",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.lux_s_gene"
      },
      {
        "name": "nutrients",
        "maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.nutrients"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Url Xml 3 Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_model8262229752_url_xml_model8262229752_model",
      "alias": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_model8262229752_url_xml_model8262229752_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_model8262229752_url_xml_model8262229752_model_state"
      ],
      "from": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_model8262229752_url_xml_model8262229752_model_summary"
      ],
      "from": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_model8262229752_url_xml_model8262229752_model_species_labels"
      ],
      "from": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2011 The BioModels.net Team.",
  "schema_version": "2.0"
}

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