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Wodarz2003 - 2nd Mathematical Evolution Immunological Memory Regulation Lab

About lab

Source-faithful physiology lab for Wodarz, 2003. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagewodarz2003-2nd-mathematical-evolution-immunological-memory-regul
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_i_1",
        "label": "Initial Model State I 1 (source I_1)",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.initial_model_state_i_1",
        "description": "Initial value for Model State I 1 (source I_1). Maps to source symbol `I_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_model_state_i_12",
        "label": "Initial Model State I 12 (source I_12)",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.initial_model_state_i_12",
        "description": "Initial value for Model State I 12 (source I_12). Maps to source symbol `I_12`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.variable_labels"
      },
      {
        "name": "model_state_i_1",
        "label": "Model State I 1 (source I_1)",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_i_1",
        "description": "Model State I 1 (source I_1). Maps to source symbol `I_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_i_12",
        "label": "Model State I 12 (source I_12)",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_i_12",
        "description": "Model State I 12 (source I_12). Maps to source symbol `I_12`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_i_2",
        "label": "Model State I 2 (source I_2)",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_i_2",
        "description": "Model State I 2 (source I_2). Maps to source symbol `I_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_i_21",
        "label": "Model State I 21 (source I_21)",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_i_21",
        "description": "Model State I 21 (source I_21). Maps to source symbol `I_21`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_p_1",
        "label": "Model State P 1 (source P_1)",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_p_1",
        "description": "Model State P 1 (source P_1). Maps to source symbol `P_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_p_2",
        "label": "Model State P 2 (source P_2)",
        "maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_p_2",
        "description": "Model State P 2 (source P_2). Maps to source symbol `P_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      }
    ]
  },
  "title": "Wodarz2003 - 2nd Mathematical Evolution Immunological Memory Regulation Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_wodarz_2003_wodarz2003_model",
      "alias": "physiology_cellml_wodarz_2003_wodarz2003_model",
      "parameters": {
        "model_path": "data/wodarz_2003.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_wodarz_2003_wodarz2003_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_2003_wodarz2003_model_state"
      ],
      "from": "physiology_cellml_wodarz_2003_wodarz2003_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_2003_wodarz2003_model_summary"
      ],
      "from": "physiology_cellml_wodarz_2003_wodarz2003_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_2003_wodarz2003_model_trajectory"
      ],
      "from": "physiology_cellml_wodarz_2003_wodarz2003_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_2003_wodarz2003_model_variable_labels"
      ],
      "from": "physiology_cellml_wodarz_2003_wodarz2003_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Wodarz, 2003. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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