About lab
Clean Biosimulant lab for systems signaling model: Ajay_Bhalla_2007_PKM. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageajay-bhalla-2007-pkm-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_calcium_input",
"label": "Initial calcium Input",
"maps_to": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.initial_calcium_input",
"description": "Initial level of calcium Input. Maps to SBML symbol `Ca_input`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_dag",
"label": "Initial DAG",
"maps_to": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.initial_dag",
"description": "Initial level of DAG. Maps to SBML symbol `DAG`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_active_pkc",
"label": "Initial active PKC",
"maps_to": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.initial_active_pkc",
"description": "Initial level of active PKC. Maps to SBML symbol `PKC_minus_active`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "calcium_bound_pkc",
"label": "Calcium bound PKC",
"maps_to": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.calcium_bound_pkc",
"description": "Calcium bound PKC. Maps to SBML symbol `PKC_slash_PKC_minus_Ca` and is emitted in native SBML units."
},
{
"name": "membrane_active_calcium_bound_pkc",
"label": "Membrane active Calcium bound PKC",
"maps_to": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.membrane_active_calcium_bound_pkc",
"description": "Membrane active Calcium bound PKC. Maps to SBML symbol `PKC_slash_PKC_minus_Ca_minus_memb_star_` and is emitted in native SBML units."
},
{
"name": "calcium_and_dag_bound_pkc",
"label": "Calcium And DAG bound PKC",
"maps_to": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.calcium_and_dag_bound_pkc",
"description": "Calcium And DAG bound PKC. Maps to SBML symbol `PKC_slash_PKC_minus_Ca_minus_DAG` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Ajay_Bhalla_2007_PKM Lab",
"models": [
{
"path": "owned/models/signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model",
"alias": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model_state"
],
"from": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.state"
},
{
"to": [
"visualisation.signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model_summary"
],
"from": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model_species_labels"
],
"from": "signaling_sbml_ajay_bhalla_2007_pkm_model9147232940_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Ajay_Bhalla_2007_PKM. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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