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Jelic2005 - Hypothalamic Pituitary Adrenal Axis Lab

About lab

Source-faithful physiology lab for Jelic, Cupic, Kolaranic, 2005. Public controls and outputs are mapped to real source symbols for transport physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagejelic2005-hypothalamic-pituitary-adrenal-axis-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_acth",
        "label": "Initial Acth",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.initial_acth",
        "description": "Initial value for Acth. Maps to source symbol `a`. Units: dimensionless. Naming evidence: source metadata names `a` as `ACTH`.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_cortisol",
        "label": "Initial Cortisol",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.initial_cortisol",
        "description": "Initial value for Cortisol. Maps to source symbol `g`. Units: dimensionless. Naming evidence: source metadata names `g` as `cortisol`.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.variable_labels"
      },
      {
        "name": "acth",
        "label": "Acth",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.acth",
        "description": "Acth. Maps to source symbol `a`. Units: dimensionless. Naming evidence: source metadata names `a` as `ACTH`."
      },
      {
        "name": "cortisol",
        "label": "Cortisol",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.cortisol",
        "description": "Cortisol. Maps to source symbol `g`. Units: dimensionless. Naming evidence: source metadata names `g` as `cortisol`."
      },
      {
        "name": "alpha",
        "label": "Alpha",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.alpha",
        "description": "Alpha. Maps to source symbol `alpha`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "beta",
        "label": "Beta",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.beta",
        "description": "Beta. Maps to source symbol `beta`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c_1_concentration",
        "label": "C 1 Concentration",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.c_1_concentration",
        "description": "C 1 Concentration. Maps to source symbol `C_1`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c_2_concentration",
        "label": "C 2 Concentration",
        "maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.c_2_concentration",
        "description": "C 2 Concentration. Maps to source symbol `C_2`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Jelic2005 - Hypothalamic Pituitary Adrenal Axis Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model",
      "alias": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model",
      "parameters": {
        "model_path": "data/jelic_cupic_kolaranic_2005.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model_state"
      ],
      "from": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model_summary"
      ],
      "from": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model_trajectory"
      ],
      "from": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model_variable_labels"
      ],
      "from": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Jelic, Cupic, Kolaranic, 2005. Public controls and outputs are mapped to real source symbols for transport physiology.",
  "schema_version": "2.0"
}

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