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Cloutier2009 - Wellstead Brain Energy Metabolism Lab

About lab

Source-faithful physiology lab for Cloutier Wellstead 2009. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagecloutier2009-wellstead-brain-energy-metabolism-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_atp_concentration",
        "label": "Initial ATP Concentration",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.initial_atp_concentration",
        "description": "Initial value for ATP Concentration. Maps to source symbol `ATP`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mM"
        ]
      },
      {
        "name": "initial_f26_p",
        "label": "Initial F26 P",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.initial_f26_p",
        "description": "Initial value for F26 P. Maps to source symbol `F26P`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mM"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.variable_labels"
      },
      {
        "name": "atp_concentration",
        "label": "ATP Concentration",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.atp_concentration",
        "description": "ATP Concentration. Maps to source symbol `ATP`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_inh",
        "label": "ATP Inh",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.atp_inh",
        "description": "ATP Inh. Maps to source symbol `ATP_inh`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "d_amp_d_atp",
        "label": "D Amp D ATP",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.d_amp_d_atp",
        "description": "D Amp D ATP. Maps to source symbol `dAMP_dATP`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ki_atp",
        "label": "Ki ATP",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.ki_atp",
        "description": "Ki ATP. Maps to source symbol `KI_ATP`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "km_atp",
        "label": "Km ATP",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.km_atp",
        "description": "Km ATP. Maps to source symbol `Km_ATP`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "km_atp_hk",
        "label": "Km ATP Hk",
        "maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.km_atp_hk",
        "description": "Km ATP Hk. Maps to source symbol `Km_ATP_hk`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Cloutier2009 - Wellstead Brain Energy Metabolism Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model",
      "alias": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model",
      "parameters": {
        "model_path": "data/cloutier_2009_a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model_state"
      ],
      "from": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model_summary"
      ],
      "from": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model_trajectory"
      ],
      "from": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model_variable_labels"
      ],
      "from": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Cloutier Wellstead 2009. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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