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Zhang2007 Mechanism Of Dna Damage Response 3 Lab

About lab

It's a mechanistic model explaining the impact of p53 on apoptosis decision. It can be used to explore systemsbiology zhang2007 mechanism of dna damage dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagezhang2007-mechanism-of-dna-damage-response-3-lab
Created2026-05-17
Updated2026-05-17
cellcyclesystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_dn_adamage",
        "label": "Initial Dn Adamage",
        "maps_to": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.initial_dn_adamage",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DNAdamage`."
      },
      {
        "name": "initial_model_state_p53",
        "label": "Initial Model State P53",
        "maps_to": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.initial_model_state_p53",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `p53`."
      },
      {
        "name": "initial_mdm2",
        "label": "Initial Mdm2",
        "maps_to": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.initial_mdm2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MDM2`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.species_labels"
      },
      {
        "name": "dn_adamage",
        "maps_to": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.dn_adamage"
      },
      {
        "name": "p53",
        "maps_to": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.p53"
      },
      {
        "name": "mdm2",
        "maps_to": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.mdm2"
      }
    ]
  },
  "tags": [
    "cellcycle",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Zhang2007 Mechanism Of Dna Damage Response 3 Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model",
      "alias": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model_state"
      ],
      "from": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model_summary"
      ],
      "from": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model_species_labels"
      ],
      "from": "systemsbiology_sbml_zhang2007_mechanism_of_dna_damage_response_model_biomd0000001010_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "It's a mechanistic model explaining the impact of p53 on apoptosis decision. It can be used to explore systemsbiology zhang2007 mechanism of dna damage dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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