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Corrias2008 - Gastricslowwaveactivity Lab

About lab

Source-faithful physiology lab for Corrias2008_GastricSlowWaveActivity. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagecorrias2008-gastricslowwaveactivity-lab
Created2026-05-23
Updated2026-05-23
physiologysbmlbiomodels_ebifaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_atp4_i",
        "label": "Initial Atp4 I",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.initial_atp4_i",
        "description": "Initial value for Atp4 I. Maps to source symbol `ATP4_i`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "initial_atp4_m",
        "label": "Initial Atp4 M",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.initial_atp4_m",
        "description": "Initial value for Atp4 M. Maps to source symbol `ATP4_m`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.trajectory"
      },
      {
        "name": "species_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.species_labels"
      },
      {
        "name": "model_state_a_f1",
        "label": "Model State A F1 (source A_F1)",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_a_f1",
        "description": "Model State A F1 (source A_F1). Maps to source symbol `A_F1`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_d_bk",
        "label": "Model State D Bk (source d_BK)",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_d_bk",
        "description": "Model State D Bk (source d_BK). Maps to source symbol `d_BK`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_d_na",
        "label": "Model State D Na (source d_Na)",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_d_na",
        "description": "Model State D Na (source d_Na). Maps to source symbol `d_Na`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_e_cl",
        "label": "Model State E Cl (source E_Cl)",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_e_cl",
        "description": "Model State E Cl (source E_Cl). Maps to source symbol `E_Cl`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_e_na",
        "label": "Model State E Na (source E_Na)",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_e_na",
        "description": "Model State E Na (source E_Na). Maps to source symbol `E_Na`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_f_na",
        "label": "Model State F Na (source f_Na)",
        "maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_f_na",
        "description": "Model State F Na (source f_Na). Maps to source symbol `f_Na`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
      }
    ]
  },
  "title": "Corrias2008 - Gastricslowwaveactivity Lab",
  "models": [
    {
      "path": "owned/models/physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model",
      "alias": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model",
      "parameters": {
        "model_path": "data/MODEL0913095435.xml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model_state"
      ],
      "from": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.state"
    },
    {
      "to": [
        "visualisation.physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model_summary"
      ],
      "from": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model_trajectory"
      ],
      "from": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model_species_labels"
      ],
      "from": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Corrias2008_GastricSlowWaveActivity. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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