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Yapo2017- cAMP/PKA signalling in D1 dopamine receptor expressing medium-spiny neurons Lab

About lab

Clean Biosimulant lab for systems signaling model: Yapo2017- cAMP/PKA signalling in D1 dopamine receptor expressing medium-spiny neurons. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
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Metadata

Packageyapo2017-camp-pka-signalling-in-d1-dopamine-receptor-expressing
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicamp-pkagpcrneurosciencephysiologyvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_amp",
        "label": "Initial AMP",
        "maps_to": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.initial_amp",
        "description": "Initial level of AMP. Maps to SBML symbol `mw9710c658_a2a1_4f49_b494_af109853f251`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_atp",
        "label": "Initial ATP",
        "maps_to": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.initial_atp",
        "description": "Initial level of ATP. Maps to SBML symbol `mw46dccec6_6f0f_40f6_a10c_2f34ae7a005a`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_calcium",
        "label": "Initial calcium",
        "maps_to": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.initial_calcium",
        "description": "Initial level of calcium. Maps to SBML symbol `mwccd3a17c_e207_4663_9b16_327b78882497`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "golf_g_protein",
        "label": "Golf G protein",
        "maps_to": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.golf_g_protein",
        "description": "Golf G protein. Maps to SBML symbol `mw351f6cee_3e64_4b8e_8e60_24b1aca99a92` and is emitted in native SBML units."
      },
      {
        "name": "camp",
        "label": "cAMP",
        "maps_to": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.camp",
        "description": "cAMP. Maps to SBML symbol `mw1c97b02d_169a_4eb8_bc84_1be57c51a255` and is emitted in native SBML units."
      },
      {
        "name": "source_defined_ac5_state",
        "label": "source-defined AC5 state",
        "maps_to": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.source_defined_ac5_state",
        "description": "source-defined AC5 state. Maps to SBML symbol `mw724f1afe_8032_40ae_96ca_808ab7b8b943` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "camp-pka",
    "gpcr",
    "neuroscience",
    "physiology"
  ],
  "title": "Yapo2017- cAMP/PKA signalling in D1 dopamine receptor expressing medium-spiny neurons Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model",
      "alias": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model_state"
      ],
      "from": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model_summary"
      ],
      "from": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model_species_labels"
      ],
      "from": "signaling_sbml_yapo2017_camp_pka_signalling_in_d1_dopamine_rece_model1701170000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Yapo2017- cAMP/PKA signalling in D1 dopamine receptor expressing medium-spiny neurons. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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