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Leloup2003 Circclock Ld Lab

About lab

This model is described in the paper Toward a detailed computational model for the mammalian circadian clock . In this model only interlocked negative and positive regulation of Per, Cry, Bmal gene ar.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageleloup2003-circclock-ld-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_mb",
        "label": "Initial Model State Mb",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_model_state_mb",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0`."
      },
      {
        "name": "initial_model_state_mp",
        "label": "Initial Model State Mp",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_model_state_mp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_7`."
      },
      {
        "name": "initial_model_state_bc",
        "label": "Initial Model State Bc",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_model_state_bc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_1`."
      },
      {
        "name": "initial_model_state_bn",
        "label": "Initial Model State Bn",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_model_state_bn",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_3`."
      },
      {
        "name": "initial_model_state_mc",
        "label": "Initial Model State Mc",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_model_state_mc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_5`."
      },
      {
        "name": "initial_p_cn",
        "label": "Initial P Cn",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_p_cn",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_12`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.species_labels"
      },
      {
        "name": "model_state_mb",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.model_state_mb"
      },
      {
        "name": "model_state_mp",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.model_state_mp"
      },
      {
        "name": "model_state_bc",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.model_state_bc"
      },
      {
        "name": "model_state_bn",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.model_state_bn"
      },
      {
        "name": "model_state_mc",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.model_state_mc"
      },
      {
        "name": "p_cn",
        "maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.p_cn"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Leloup2003 Circclock Ld Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model",
      "alias": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model_state"
      ],
      "from": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model_summary"
      ],
      "from": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model_species_labels"
      ],
      "from": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is described in the paper Toward a detailed computational model for the mammalian circadian clock . In this model only interlocked negative and positive regulation of Per, Cry, Bmal gene ar.",
  "schema_version": "2.0"
}

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