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Physiome 496 - Bg Mica Lab

About lab

Source-faithful physiology lab for BG Mica models. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-496-bg-mica-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_omega",
        "label": "Initial Omega",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.initial_omega",
        "description": "Initial value for Omega. Maps to source symbol `omega`. Units: per_s. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "per_s"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.variable_labels"
      },
      {
        "name": "omega",
        "label": "Omega",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.omega",
        "description": "Omega. Maps to source symbol `omega`. Units: per_s. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "amplitude",
        "label": "Amplitude",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.amplitude",
        "description": "Amplitude. Maps to source symbol `amplitude`. Units: Js_per_C2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "amplitude_ref",
        "label": "Amplitude Ref",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.amplitude_ref",
        "description": "Amplitude Ref. Maps to source symbol `amplitude_ref`. Units: Js_per_C2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "log_amplitude",
        "label": "Log Amplitude",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.log_amplitude",
        "description": "Log Amplitude. Maps to source symbol `logAmplitude`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "log_omega",
        "label": "Log Omega",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.log_omega",
        "description": "Log Omega. Maps to source symbol `logOmega`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "log_omega_3",
        "label": "Log Omega 3",
        "maps_to": "physiology_cellml_bg_mica_models_496_model.log_omega_3",
        "description": "Log Omega 3. Maps to source symbol `logOmega_3`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 496 - Bg Mica Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_bg_mica_models_496_model",
      "alias": "physiology_cellml_bg_mica_models_496_model",
      "parameters": {
        "model_path": "data/BG_tutorial_model_solid_mechanics_4_Lorenz_s-domain.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_bg_mica_models_496_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_bg_mica_models_496_model_state"
      ],
      "from": "physiology_cellml_bg_mica_models_496_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bg_mica_models_496_model_summary"
      ],
      "from": "physiology_cellml_bg_mica_models_496_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bg_mica_models_496_model_trajectory"
      ],
      "from": "physiology_cellml_bg_mica_models_496_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bg_mica_models_496_model_variable_labels"
      ],
      "from": "physiology_cellml_bg_mica_models_496_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for BG Mica models. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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