About lab
Physiome aed - Physics Example 1 Electrical Circuit Lab
Scientific Source
- Source type:
PhysioMe CellML - Upstream ID:
physiome:aed - Original URL: https://models.physiomeproject.org/workspace/aed
- Bundled artifact:
data/FAIRDO_BG_example_3.1.1.cellml
The bundled CellML/SBML artifact remains the scientific source of truth. This cleanup does not rewrite equations, parameters, units, or initial values; it exposes selected source symbols with conservative user-facing names.
Public Interface
Source-backed inputs:
initial_model_state_e_r(Model State E R (source E_R)) maps to source symbolE_R; units:joule; evidence: source symbol is too ambiguous for a stronger public label.initial_model_state_q_c(Model State Q C (source q_C)) maps to source symbolq_C; units:coulomb; evidence: source symbol is too ambiguous for a stronger public label.- The simulator still uses an internal
integration_stepparameter from the model manifest; it is not exposed as a biological lab input.
Selected outputs:
state,summary,trajectory, andvariable_labelsremain available for traceability.model_state_e_r(Model State E R (source E_R)) maps to source symbolE_R; units:joule; evidence: source symbol is too ambiguous for a stronger public label.model_state_q_c(Model State Q C (source q_C)) maps to source symbolq_C; units:coulomb; evidence: source symbol is too ambiguous for a stronger public label.model_state_v_l(Model State V L (source v_L)) maps to source symbolv_L; units:C_per_s; evidence: source symbol is too ambiguous for a stronger public label.main_c(Main C) maps to source symbolC; units:C2_per_J; evidence: source symbol, component, or units provide a direct public name.main_l(Main L) maps to source symbolL; units:Js2_per_C2; evidence: source symbol, component, or units provide a direct public name.main_r(Main R) maps to source symbolR; units:Js_per_C2; evidence: source symbol, component, or units provide a direct public name.
Ambiguous source symbols are intentionally given conservative names such as model_state_*, cell_population_*, or rate_constant_* rather than unsupported biological interpretations.
Visualisations
Visual scope: Selected source-variable trajectories; final observable ranking; source/runtime evidence table; scientific Q/A.
The visualisation renders a scientific Q/A table, selected source-variable trajectories, final observable values, and source/runtime evidence. The cards use runtime outputs from the core wrapper and suppress empty data.
Output Visualizations




Caveat
This validates source-faithful execution and Biosimulant wiring for source-model physiology; it does not claim clinical safety or full reproduction of every upstream figure.
Source-faithful physiology lab for The Physics of Physiology - Example 1: An electrical circuit. Public controls and outputs are mapped to real source symbols for source-model physiology.
Runtime
Runs
Metadata
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_e_r",
"label": "Initial Model State E R (source E_R)",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.initial_model_state_e_r",
"description": "Initial value for Model State E R (source E_R). Maps to source symbol `E_R`. Units: joule. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"joule"
]
},
{
"name": "initial_model_state_q_c",
"label": "Initial Model State Q C (source q_C)",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.initial_model_state_q_c",
"description": "Initial value for Model State Q C (source q_C). Maps to source symbol `q_C`. Units: coulomb. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"coulomb"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.variable_labels"
},
{
"name": "model_state_e_r",
"label": "Model State E R (source E_R)",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.model_state_e_r",
"description": "Model State E R (source E_R). Maps to source symbol `E_R`. Units: joule. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_q_c",
"label": "Model State Q C (source q_C)",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.model_state_q_c",
"description": "Model State Q C (source q_C). Maps to source symbol `q_C`. Units: coulomb. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_v_l",
"label": "Model State V L (source v_L)",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.model_state_v_l",
"description": "Model State V L (source v_L). Maps to source symbol `v_L`. Units: C_per_s. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "main_c",
"label": "Main C",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.main_c",
"description": "Main C. Maps to source symbol `C`. Units: C2_per_J. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_l",
"label": "Main L",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.main_l",
"description": "Main L. Maps to source symbol `L`. Units: Js2_per_C2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_r",
"label": "Main R",
"maps_to": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.main_r",
"description": "Main R. Maps to source symbol `R`. Units: Js_per_C2. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome aed - Physics Example 1 Electrical Circuit Lab",
"models": [
{
"path": "owned/models/physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model",
"alias": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model",
"parameters": {
"model_path": "data/FAIRDO_BG_example_3.1.1.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model_state"
],
"from": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.state"
},
{
"to": [
"visualisation.physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model_summary"
],
"from": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model_trajectory"
],
"from": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model_variable_labels"
],
"from": "physiology_cellml_the_physics_of_physiology_example_1_an_electrica_aed_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for The Physics of Physiology - Example 1: An electrical circuit. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
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