About lab
Source-faithful physiology lab for Bertram, Satin, Pedersen, Luciani, Sherman, 2007. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagebertram2007-mathematical-interaction-between-glycolysis-b4a63d44
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_voltage_dependent_potassium_current_n_gate",
"label": "Initial Voltage Dependent Potassium Current N Gate",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.initial_voltage_dependent_potassium_current_n_gate",
"description": "Initial value for Voltage Dependent Potassium Current N Gate. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source metadata names `n` as `voltage-dependent potassium current n gate`.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `Vm`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `Vm`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "membrane_voltage_v",
"label": "Membrane Voltage V",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.membrane_voltage_v",
"description": "Membrane Voltage V. Maps to source symbol `v`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "adp3m",
"label": "Adp3m",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.adp3m",
"description": "Adp3m. Maps to source symbol `adp3m`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "mgadp",
"label": "Mgadp",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.mgadp",
"description": "Mgadp. Maps to source symbol `mgadp`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cytosolic_adp_concentration",
"label": "Cytosolic ADP Concentration",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.cytosolic_adp_concentration",
"description": "Cytosolic ADP Concentration. Maps to source symbol `adp`. Units: micromolar. Naming evidence: source metadata names `adp` as `cytosolic ADP concentration`."
},
{
"name": "mitochondrial_adp",
"label": "Mitochondrial ADP",
"maps_to": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.mitochondrial_adp",
"description": "Mitochondrial ADP. Maps to source symbol `ADPm`. Units: millimolar. Naming evidence: source metadata names `ADPm` as `mitochondrial ADP`."
}
]
},
"title": "Bertram2007 - Mathematical Interaction Between Glycolysis Mitochondrial Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model",
"parameters": {
"model_path": "data/bertram_satin_pedersen_luciani_sherman_2007.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model_state"
],
"from": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.state"
},
{
"to": [
"visualisation.physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model_summary"
],
"from": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model_trajectory"
],
"from": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model_variable_labels"
],
"from": "physiology_cellml_bertram_satin_pedersen_luciani_sherman_2007_bertramsatinpedersenlucianisherman2007_model.variable_labels"
}
],
"package": "bertram2007-mathematical-interaction-between-glycolysis-b4a63d44",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Bertram, Satin, Pedersen, Luciani, Sherman, 2007. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
"schema_version": "2.0"
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