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deBack2012 Pancreas Lineage Specification Lab

About lab

Two-cell pancreas endocrine/exocrine lineage specification model executed directly from bundled SBML.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagedeback2012-pancreas-lineage-specification-lab
Created2026-05-15
Updated2026-05-15
developmentsbmltelluriumfaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "starting_first_cell_first_fate_signal",
        "label": "Starting first-cell first-fate signal",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "deback2012_pancreas_lineage.starting_first_cell_first_fate_signal",
        "description": "Setup-time initial value for the first lineage signal in neighboring cell i. Maps to SBML symbol `species_1` (`Xi`)."
      },
      {
        "name": "starting_first_cell_second_fate_signal",
        "label": "Starting first-cell second-fate signal",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "deback2012_pancreas_lineage.starting_first_cell_second_fate_signal",
        "description": "Setup-time initial value for the second lineage signal in neighboring cell i. Maps to SBML symbol `species_2` (`Yi`)."
      },
      {
        "name": "starting_second_cell_first_fate_signal",
        "label": "Starting second-cell first-fate signal",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "deback2012_pancreas_lineage.starting_second_cell_first_fate_signal",
        "description": "Setup-time initial value for the first lineage signal in neighboring cell j. Maps to SBML symbol `species_3` (`Xj`)."
      },
      {
        "name": "starting_second_cell_second_fate_signal",
        "label": "Starting second-cell second-fate signal",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "deback2012_pancreas_lineage.starting_second_cell_second_fate_signal",
        "description": "Setup-time initial value for the second lineage signal in neighboring cell j. Maps to SBML symbol `species_4` (`Yj`)."
      }
    ],
    "outputs": [
      {
        "name": "cell_i_first_lineage_signal",
        "label": "Cell i first lineage signal",
        "maps_to": "deback2012_pancreas_lineage.cell_i_first_lineage_signal",
        "description": "Cell i first lineage signal. Maps to SBML symbol `species_1`."
      },
      {
        "name": "cell_i_second_lineage_signal",
        "label": "Cell i second lineage signal",
        "maps_to": "deback2012_pancreas_lineage.cell_i_second_lineage_signal",
        "description": "Cell i second lineage signal. Maps to SBML symbol `species_2`."
      },
      {
        "name": "cell_j_first_lineage_signal",
        "label": "Cell j first lineage signal",
        "maps_to": "deback2012_pancreas_lineage.cell_j_first_lineage_signal",
        "description": "Cell j first lineage signal. Maps to SBML symbol `species_3`."
      },
      {
        "name": "cell_j_second_lineage_signal",
        "label": "Cell j second lineage signal",
        "maps_to": "deback2012_pancreas_lineage.cell_j_second_lineage_signal",
        "description": "Cell j second lineage signal. Maps to SBML symbol `species_4`."
      },
      {
        "name": "state",
        "maps_to": "deback2012_pancreas_lineage.state",
        "description": "Full friendly observable record."
      },
      {
        "name": "summary",
        "maps_to": "deback2012_pancreas_lineage.summary",
        "description": "Core model run summary."
      },
      {
        "name": "species_labels",
        "maps_to": "deback2012_pancreas_lineage.species_labels",
        "description": "Friendly observable display labels."
      }
    ]
  },
  "title": "deBack2012 Pancreas Lineage Specification Lab",
  "models": [
    {
      "path": "owned/models/deback2012_pancreas_lineage",
      "alias": "deback2012_pancreas_lineage",
      "parameters": {
        "model_path": "data/BIOMD0000000435.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/deback2012_pancreas_lineage"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.core_state"
      ],
      "from": "deback2012_pancreas_lineage.state"
    },
    {
      "to": [
        "visualisation.core_summary"
      ],
      "from": "deback2012_pancreas_lineage.summary"
    },
    {
      "to": [
        "visualisation.core_species_labels"
      ],
      "from": "deback2012_pancreas_lineage.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Two-cell pancreas endocrine/exocrine lineage specification model executed directly from bundled SBML.",
  "schema_version": "2.0"
}

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