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Miftakhov1999 - Numerical Simulation Motility Patterns Small Bowel 1 Lab

About lab

Source-faithful physiology lab for Miftakhov, Abdusheva, Christensen, 1999. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagemiftakhov1999-numerical-simulation-motility-patterns-small-bowel
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_calcium_concentration",
        "label": "Initial Calcium Concentration",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.initial_calcium_concentration",
        "description": "Initial value for Calcium Concentration. Maps to source symbol `Ca`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millimolar"
        ]
      },
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.variable_labels"
      },
      {
        "name": "calcium_concentration",
        "label": "Calcium Concentration",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.calcium_concentration",
        "description": "Calcium Concentration. Maps to source symbol `Ca`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "concentration_k_c",
        "label": "Concentration K C (source K_c)",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.concentration_k_c",
        "description": "Concentration K C (source K_c). Maps to source symbol `K_c`. Units: millimolar_per_millivolt. Naming evidence: amount concentration units identify a concentration state."
      },
      {
        "name": "potassium_conductance",
        "label": "Potassium Conductance",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.potassium_conductance",
        "description": "Potassium Conductance. Maps to source symbol `g_Ca_K`. Units: milliS_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_current_i_ca_k",
        "label": "Potassium Current I Ca K",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.potassium_current_i_ca_k",
        "description": "Potassium Current I Ca K. Maps to source symbol `i_Ca_K`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "rho",
        "label": "Rho",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.rho",
        "description": "Rho. Maps to source symbol `rho`. Units: per_millisecond. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Miftakhov1999 - Numerical Simulation Motility Patterns Small Bowel 1 Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model",
      "alias": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model",
      "parameters": {
        "model_path": "data/miftakhov_abdusheva_christensen_1999.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model_state"
      ],
      "from": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model_summary"
      ],
      "from": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model_trajectory"
      ],
      "from": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model_variable_labels"
      ],
      "from": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Miftakhov, Abdusheva, Christensen, 1999. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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