About lab
Source-faithful physiology lab for Calzone, Thieffry, Tyson, Novak, 2007. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagecalzone2007-dynamical-modeling-syncytial-mitotic-cycles-drosophi
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_fzy",
"label": "Initial Fzy",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.initial_fzy",
"description": "Initial value for Fzy. Maps to source symbol `FZY`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_mitotic_cycle_state_n",
"label": "Initial Mitotic Cycle State N (source N)",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.initial_mitotic_cycle_state_n",
"description": "Initial value for Mitotic Cycle State N (source N). Maps to source symbol `N`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.variable_labels"
},
{
"name": "fzy",
"label": "Fzy",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.fzy",
"description": "Fzy. Maps to source symbol `FZY`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "mitotic_cycle_state_n",
"label": "Mitotic Cycle State N (source N)",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.mitotic_cycle_state_n",
"description": "Mitotic Cycle State N (source N). Maps to source symbol `N`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label."
},
{
"name": "mitotic_entry_state_ie",
"label": "Mitotic Entry State Ie (source IE)",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.mitotic_entry_state_ie",
"description": "Mitotic Entry State Ie (source IE). Maps to source symbol `IE`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label."
},
{
"name": "mitotic_state_xm",
"label": "Mitotic State Xm (source Xm)",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.mitotic_state_xm",
"description": "Mitotic State Xm (source Xm). Maps to source symbol `Xm`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label."
},
{
"name": "mitotic_state_xp",
"label": "Mitotic State Xp (source Xp)",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.mitotic_state_xp",
"description": "Mitotic State Xp (source Xp). Maps to source symbol `Xp`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label."
},
{
"name": "mpf_c",
"label": "Mpf C",
"maps_to": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.mpf_c",
"description": "Mpf C. Maps to source symbol `MPF_c`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Calzone2007 - Dynamical Modeling Syncytial Mitotic Cycles Drosophila Lab",
"models": [
{
"path": "owned/models/physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model",
"alias": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model",
"parameters": {
"model_path": "data/calzone_thieffry_tyson_novak_2007.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model_state"
],
"from": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.state"
},
{
"to": [
"visualisation.physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model_summary"
],
"from": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model_trajectory"
],
"from": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model_variable_labels"
],
"from": "physiology_cellml_calzone_thieffry_tyson_novak_2007_calzonethieffrytysonnovak2007_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Calzone, Thieffry, Tyson, Novak, 2007. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.",
"schema_version": "2.0"
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