About lab
Single-model lab wrapper for Deineko2003_CellCycle. The model reproduces Fig 3 of the paper corresponding to the transition to S phase. Units have not been defined for this model because the paper mentions the use of arbitrary units for the various spe.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagedeineko2003-cellcycle-lab
Created2026-05-15
Updated2026-05-15
cellcyclesbmlbiomodels_ebifaithfulvisualisation
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "e2f",
"label": "E2F",
"maps_to": "cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.e2f",
"description": "Tracks E2F in the lab model via `cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.e2f`."
},
{
"name": "phosphorylated_rb",
"label": "Phosphorylated Rb",
"maps_to": "cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.phosphorylated_rb",
"description": "Tracks Phosphorylated Rb in the lab model via `cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.phosphorylated_rb`."
},
{
"name": "phosphorylated_phosphorylated_rb",
"label": "Phosphorylated Phosphorylated Rb",
"maps_to": "cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.phosphorylated_phosphorylated_rb",
"description": "Tracks Phosphorylated Phosphorylated Rb in the lab model via `cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.phosphorylated_phosphorylated_rb`."
},
{
"name": "inactive_cyclin_e_cdk2",
"label": "Inactive Cyclin E CDK2",
"maps_to": "cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.inactive_cyclin_e_cdk2",
"description": "Tracks Inactive Cyclin E CDK2 in the lab model via `cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.inactive_cyclin_e_cdk2`."
},
{
"name": "active_cyclin_e_cdk2",
"label": "Active Cyclin E CDK2",
"maps_to": "cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.active_cyclin_e_cdk2",
"description": "Tracks Active Cyclin E CDK2 in the lab model via `cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.active_cyclin_e_cdk2`."
},
{
"name": "ap_1",
"label": "AP 1",
"maps_to": "cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.ap_1",
"description": "Tracks AP 1 in the lab model via `cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.ap_1`."
}
]
},
"title": "Deineko2003_CellCycle Lab",
"models": [
{
"path": "owned/models/cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model",
"alias": "cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model",
"provenance": {
"owned_path": "owned/models/cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model_state"
],
"from": "cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.state"
},
{
"to": [
"visualisation.cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model_summary"
],
"from": "cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.summary"
},
{
"to": [
"visualisation.cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model_species_labels"
],
"from": "cellcycle_sbml_deineko2003_cellcycle_biomd0000000208_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "Single-model lab wrapper for Deineko2003_CellCycle. The model reproduces Fig 3 of the paper corresponding to the transition to S phase. Units have not been defined for this model because the paper mentions the use of arbitrary units for the various spe.",
"schema_version": "2.0"
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