About lab
Clean Biosimulant lab for JAK/STAT cytokine signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesobotta2017-il-6-induced-jak1-stat3-signaling-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicytokine-signalingjak-statinterleukin-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_input_rux1_level",
"label": "Input Rux1",
"maps_to": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.initial_input_rux1_level",
"description": "Input Rux1 source parameter. Maps to SBML symbol `input_rux1` and preserves the bundled default."
},
{
"name": "initial_input_rux2_level",
"label": "Input Rux2",
"maps_to": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.initial_input_rux2_level",
"description": "Input Rux2 source parameter. Maps to SBML symbol `input_rux2` and preserves the bundled default."
},
{
"name": "initial_input_rux3_level",
"label": "Input Rux3",
"maps_to": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.initial_input_rux3_level",
"description": "Input Rux3 source parameter. Maps to SBML symbol `input_rux3` and preserves the bundled default."
}
],
"outputs": [
{
"name": "unphosphorylated_receptor",
"label": "Unphosphorylated Receptor",
"maps_to": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.unphosphorylated_receptor",
"description": "Unphosphorylated Receptor. Maps to SBML symbol `JAK1_gp130` and is emitted in native SBML units."
},
{
"name": "phosphorylated_jak1_receptor",
"label": "Phosphorylated JAK1 Receptor",
"maps_to": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.phosphorylated_jak1_receptor",
"description": "Phosphorylated JAK1 Receptor. Maps to SBML symbol `pJAK1_gp130` and is emitted in native SBML units."
},
{
"name": "active_receptor",
"label": "active Receptor",
"maps_to": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.active_receptor",
"description": "active Receptor. Maps to SBML symbol `pJAK1_pgp130` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cytokine-signaling",
"jak-stat",
"interleukin-signaling"
],
"title": "Sobotta2017 - IL-6-induced JAK1-STAT3-signaling Lab",
"models": [
{
"path": "owned/models/signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model",
"alias": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model_state"
],
"from": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.state"
},
{
"to": [
"visualisation.signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model_summary"
],
"from": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model_species_labels"
],
"from": "signaling_sbml_sobotta2017_il_6_induced_jak1_stat3_signaling_model2307050001_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for JAK/STAT cytokine signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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