About lab
This a model from the article: Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drugtargets. It can be used to explore systemsbiology singh2006 tca ecoli glucose BioModels0000000222 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesingh2006-tca-ecoli-glucose-lab
Created2026-05-17
Updated2026-05-17
metabolismpharmacologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_gly",
"label": "Initial Model State Gly",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.initial_model_state_gly",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `gly`."
},
{
"name": "initial_model_state_cit",
"label": "Initial Model State Cit",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.initial_model_state_cit",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cit`."
},
{
"name": "initial_model_state_mal",
"label": "Initial Model State Mal",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.initial_model_state_mal",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mal`."
},
{
"name": "initial_model_state_suc",
"label": "Initial Model State Suc",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.initial_model_state_suc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `suc`."
},
{
"name": "initial_model_state_aca",
"label": "Initial Model State Aca",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.initial_model_state_aca",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `aca`."
},
{
"name": "initial_model_state_fa",
"label": "Initial Model State Fa",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.initial_model_state_fa",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `fa`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.species_labels"
},
{
"name": "gly",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.gly"
},
{
"name": "cit",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.cit"
},
{
"name": "mal",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.mal"
},
{
"name": "suc",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.suc"
},
{
"name": "aca",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.aca"
},
{
"name": "model_state_fa",
"maps_to": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.model_state_fa"
}
]
},
"tags": [
"metabolism",
"pharmacology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Singh2006 Tca Ecoli Glucose Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model",
"alias": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model_state"
],
"from": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model_summary"
],
"from": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model_species_labels"
],
"from": "systemsbiology_sbml_singh2006_tca_ecoli_glucose_biomd0000000222_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This a model from the article: Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drugtargets. It can be used to explore systemsbiology singh2006 tca ecoli glucose BioModels0000000222 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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