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Mol2013 - Immune Signal Transduction in Leishmaniasis Lab

About lab

Created by The MathWorks, Inc. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagemol2013-immune-signal-transduction-in-leishmaniasis-lab
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_tumor_necrosis_factor",
        "label": "Initial Tumor Necrosis Factor",
        "units": "MWBUILTINPREFIX_nano_MWBUILTINUNIT_mole",
        "default": 1.5,
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.initial_tumor_necrosis_factor",
        "description": "Initial Tumor Necrosis Factor. Sets the initial value of bundled SBML species `mw4d2e70a7_f499_461d_ae18_bc53b365b091`."
      },
      {
        "name": "initial_tnf_receptor_1",
        "label": "Initial Tnf Receptor 1",
        "units": "MWBUILTINPREFIX_nano_MWBUILTINUNIT_mole",
        "default": 1.3,
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.initial_tnf_receptor_1",
        "description": "Initial Tnf Receptor 1. Sets the initial value of bundled SBML species `mw8cc67de0_64e6_428f_ab09_4c2825cc172c`."
      },
      {
        "name": "initial_tradd_traf2_rip_complex",
        "label": "Initial Tradd Traf2 Rip Complex",
        "units": "MWBUILTINPREFIX_nano_MWBUILTINUNIT_mole",
        "default": 1.3,
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.initial_tradd_traf2_rip_complex",
        "description": "Initial Tradd Traf2 Rip Complex. Sets the initial value of bundled SBML species `mw6ee00a71_ab68_454b_b1cd_60c1ebd19cfa`."
      },
      {
        "name": "initial_unresolved_infection_observable_1",
        "label": "Initial Unresolved Infection Observable 1",
        "units": "MWBUILTINPREFIX_nano_MWBUILTINUNIT_mole",
        "default": 0.8,
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.initial_unresolved_infection_observable_1",
        "description": "Initial Unresolved Infection Observable 1. Sets the initial value of bundled SBML species `mw2dc73059_a841_48d5_b4bd_3ac24d94c42e`."
      },
      {
        "name": "initial_unresolved_infection_observable_2",
        "label": "Initial Unresolved Infection Observable 2",
        "units": "MWBUILTINPREFIX_nano_MWBUILTINUNIT_mole",
        "default": 1.5,
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.initial_unresolved_infection_observable_2",
        "description": "Initial Unresolved Infection Observable 2. Sets the initial value of bundled SBML species `mw136c8391_14f4_4a28_83a3_35cc74a2e040`."
      }
    ],
    "outputs": [
      {
        "name": "tumor_necrosis_factor",
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.tumor_necrosis_factor"
      },
      {
        "name": "tnf_receptor_1",
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.tnf_receptor_1"
      },
      {
        "name": "tradd_traf2_rip_complex",
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.tradd_traf2_rip_complex"
      },
      {
        "name": "unresolved_infection_observable_1",
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.unresolved_infection_observable_1"
      },
      {
        "name": "unresolved_infection_observable_2",
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.unresolved_infection_observable_2"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.species_labels"
      }
    ]
  },
  "title": "Mol2013 - Immune Signal Transduction in Leishmaniasis Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model",
      "alias": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model_state"
      ],
      "from": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model_summary"
      ],
      "from": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model_species_labels"
      ],
      "from": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Created by The MathWorks, Inc. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
  "schema_version": "2.0"
}

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