Chassagnole2001 - Integrated Study Threonine Pathway Enzyme Kinetics Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_atp_concentration",
        "label": "Initial ATP Concentration",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.initial_atp_concentration",
        "description": "Initial value for ATP Concentration. Maps to source symbol `ATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millimolar"
        ]
      },
      {
        "name": "initial_adp_concentration",
        "label": "Initial ADP Concentration",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.initial_adp_concentration",
        "description": "Initial value for ADP Concentration. Maps to source symbol `ADP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.variable_labels"
      },
      {
        "name": "atp_concentration",
        "label": "ATP Concentration",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.atp_concentration",
        "description": "ATP Concentration. Maps to source symbol `ATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "adp_concentration",
        "label": "ADP Concentration",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.adp_concentration",
        "description": "ADP Concentration. Maps to source symbol `ADP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "nadp",
        "label": "Nadp",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.nadp",
        "description": "Nadp. Maps to source symbol `NADP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "nadph",
        "label": "Nadph",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.nadph",
        "description": "Nadph. Maps to source symbol `NADPH`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "k_i_atp",
        "label": "K I ATP",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.k_i_atp",
        "description": "K I ATP. Maps to source symbol `K_iATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "k_atp",
        "label": "K ATP",
        "maps_to": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.k_atp",
        "description": "K ATP. Maps to source symbol `K_ATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Chassagnole2001 - Integrated Study Threonine Pathway Enzyme Kinetics Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model",
      "alias": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model",
      "parameters": {
        "model_path": "data/chassagnole_rais_quentin_fell_mazat_2001.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model_state"
      ],
      "from": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model_summary"
      ],
      "from": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model_trajectory"
      ],
      "from": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model_variable_labels"
      ],
      "from": "physiology_cellml_chassagnole_rais_quentin_fell_mazat_2001_chassagnoleraisquentinfellmazat2001_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Chassagnole, Rais, Quentin, Fell, Mazat, 2001. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}