About lab
The paper describes a full model of oncolytic virotherapy. Created by COPASI 4.25 (Build 207) This model is described in the article: Memory versus effector immune responses in oncolytic virotherapies.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagemacnamara2015-1-virotherapy-full-model-lab
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_unresolved_tumor_observable_1",
"label": "Initial Unresolved Tumor Observable 1",
"units": "substance",
"default": 1000000,
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.initial_unresolved_tumor_observable_1",
"description": "Initial Unresolved Tumor Observable 1. Sets the initial value of bundled SBML species `U`."
},
{
"name": "initial_unresolved_tumor_observable_2",
"label": "Initial Unresolved Tumor Observable 2",
"units": "substance",
"default": 0,
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.initial_unresolved_tumor_observable_2",
"description": "Initial Unresolved Tumor Observable 2. Sets the initial value of bundled SBML species `I`."
},
{
"name": "initial_unresolved_tumor_observable_3",
"label": "Initial Unresolved Tumor Observable 3",
"units": "substance",
"default": 1,
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.initial_unresolved_tumor_observable_3",
"description": "Initial Unresolved Tumor Observable 3. Sets the initial value of bundled SBML species `M`."
},
{
"name": "initial_unresolved_tumor_observable_4",
"label": "Initial Unresolved Tumor Observable 4",
"units": "substance",
"default": 0,
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.initial_unresolved_tumor_observable_4",
"description": "Initial Unresolved Tumor Observable 4. Sets the initial value of bundled SBML species `E`."
},
{
"name": "initial_unresolved_tumor_observable_5",
"label": "Initial Unresolved Tumor Observable 5",
"units": "substance",
"default": 1,
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.initial_unresolved_tumor_observable_5",
"description": "Initial Unresolved Tumor Observable 5. Sets the initial value of bundled SBML species `V`."
},
{
"name": "tumor_growth_rate",
"label": "Tumor Growth Rate",
"units": "unit_0",
"default": 0.927,
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.tumor_growth_rate",
"description": "Tumor Growth Rate. Sets bundled SBML parameter `r`."
}
],
"outputs": [
{
"name": "unresolved_tumor_observable_1",
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.unresolved_tumor_observable_1"
},
{
"name": "unresolved_tumor_observable_2",
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.unresolved_tumor_observable_2"
},
{
"name": "unresolved_tumor_observable_3",
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.unresolved_tumor_observable_3"
},
{
"name": "unresolved_tumor_observable_4",
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.unresolved_tumor_observable_4"
},
{
"name": "unresolved_tumor_observable_5",
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.unresolved_tumor_observable_5"
},
{
"name": "state",
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.state"
},
{
"name": "summary",
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.summary"
},
{
"name": "species_labels",
"maps_to": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.species_labels"
}
]
},
"title": "Macnamara2015/1 - virotherapy full model Lab",
"models": [
{
"path": "owned/models/immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model",
"alias": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model",
"provenance": {
"owned_path": "owned/models/immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model_state"
],
"from": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.state"
},
{
"to": [
"visualisation.immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model_summary"
],
"from": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.summary"
},
{
"to": [
"visualisation.immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model_species_labels"
],
"from": "immunology_sbml_macnamara2015_1_virotherapy_full_model_biomd0000000766_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "The paper describes a full model of oncolytic virotherapy. Created by COPASI 4.25 (Build 207) This model is described in the article: Memory versus effector immune responses in oncolytic virotherapies.",
"schema_version": "2.0"
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