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Millard2020 - Kinetic model of Glucose and Acetate metabolisms in E. coli Lab

About lab

Curated microbiology lab for Millard2020 - Kinetic model of Glucose and Acetate metabolisms in E. coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.

Runtime

Duration10
Comms Step0.01

Runs

Total0
Completed0
Failed0

Metadata

Packagemillard2020-kinetic-model-of-glucose-and-acetate-metabolisms-in
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "external_glucose",
        "maps_to": "millard2020_ecoli_glucose_acetate.external_glucose"
      },
      {
        "name": "extracellular_acetate_level",
        "maps_to": "millard2020_ecoli_glucose_acetate.extracellular_acetate_level"
      },
      {
        "name": "dilution_rate",
        "maps_to": "millard2020_ecoli_glucose_acetate.dilution_rate"
      },
      {
        "name": "feed_rate",
        "maps_to": "millard2020_ecoli_glucose_acetate.feed_rate"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "millard2020_ecoli_glucose_acetate.state"
      },
      {
        "name": "summary",
        "maps_to": "millard2020_ecoli_glucose_acetate.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "millard2020_ecoli_glucose_acetate.species_labels"
      },
      {
        "name": "glucose",
        "maps_to": "millard2020_ecoli_glucose_acetate.glucose"
      },
      {
        "name": "acetate",
        "maps_to": "millard2020_ecoli_glucose_acetate.acetate"
      },
      {
        "name": "extracellular_acetate",
        "maps_to": "millard2020_ecoli_glucose_acetate.extracellular_acetate"
      },
      {
        "name": "input_regulator",
        "maps_to": "millard2020_ecoli_glucose_acetate.input_regulator"
      }
    ]
  },
  "title": "Millard2020 - Kinetic model of Glucose and Acetate metabolisms in E. coli Lab",
  "models": [
    {
      "path": "owned/models/millard2020_ecoli_glucose_acetate",
      "alias": "millard2020_ecoli_glucose_acetate",
      "provenance": {
        "owned_path": "owned/models/millard2020_ecoli_glucose_acetate"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.millard2020_ecoli_glucose_acetate_state"
      ],
      "from": "millard2020_ecoli_glucose_acetate.state"
    },
    {
      "to": [
        "visualisation.millard2020_ecoli_glucose_acetate_summary"
      ],
      "from": "millard2020_ecoli_glucose_acetate.summary"
    },
    {
      "to": [
        "visualisation.millard2020_ecoli_glucose_acetate_species_labels"
      ],
      "from": "millard2020_ecoli_glucose_acetate.species_labels"
    },
    {
      "to": [
        "visualisation.millard2020_ecoli_glucose_acetate_glucose"
      ],
      "from": "millard2020_ecoli_glucose_acetate.glucose"
    },
    {
      "to": [
        "visualisation.millard2020_ecoli_glucose_acetate_acetate"
      ],
      "from": "millard2020_ecoli_glucose_acetate.acetate"
    },
    {
      "to": [
        "visualisation.millard2020_ecoli_glucose_acetate_extracellular_acetate"
      ],
      "from": "millard2020_ecoli_glucose_acetate.extracellular_acetate"
    },
    {
      "to": [
        "visualisation.millard2020_ecoli_glucose_acetate_input_regulator"
      ],
      "from": "millard2020_ecoli_glucose_acetate.input_regulator"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Millard2020 - Kinetic model of Glucose and Acetate metabolisms in E. coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}

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