Intercellular1995 - Intercellular Calcium Waves Mediated By Diffusio Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_ip3_receptor_inactivation_gate_h",
        "label": "Initial IP3 Receptor Inactivation Gate H (source h)",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.initial_ip3_receptor_inactivation_gate_h",
        "description": "Initial value for IP3 Receptor Inactivation Gate H (source h). Maps to source symbol `h`. Units: dimensionless. Naming evidence: calcium/IP3 context supports a conservative receptor-inactivation gate label.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_concentration_p",
        "label": "Initial Concentration P (source P)",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.initial_concentration_p",
        "description": "Initial value for Concentration P (source P). Maps to source symbol `P`. Units: micromolar. Naming evidence: amount concentration units identify a concentration state.",
        "accepted_units": [
          "micromolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.variable_labels"
      },
      {
        "name": "ip3_receptor_inactivation_gate_h",
        "label": "IP3 Receptor Inactivation Gate H (source h)",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.ip3_receptor_inactivation_gate_h",
        "description": "IP3 Receptor Inactivation Gate H (source h). Maps to source symbol `h`. Units: dimensionless. Naming evidence: calcium/IP3 context supports a conservative receptor-inactivation gate label."
      },
      {
        "name": "concentration_p",
        "label": "Concentration P (source P)",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.concentration_p",
        "description": "Concentration P (source P). Maps to source symbol `P`. Units: micromolar. Naming evidence: amount concentration units identify a concentration state."
      },
      {
        "name": "c_concentration",
        "label": "C Concentration",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.c_concentration",
        "description": "C Concentration. Maps to source symbol `c`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "beta",
        "label": "Beta",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.beta",
        "description": "Beta. Maps to source symbol `beta`. Units: flux. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "concentration_k_1",
        "label": "Concentration K 1 (source k_1)",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.concentration_k_1",
        "description": "Concentration K 1 (source k_1). Maps to source symbol `k_1`. Units: micromolar. Naming evidence: amount concentration units identify a concentration state."
      },
      {
        "name": "concentration_k_2",
        "label": "Concentration K 2 (source k_2)",
        "maps_to": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.concentration_k_2",
        "description": "Concentration K 2 (source k_2). Maps to source symbol `k_2`. Units: micromolar. Naming evidence: amount concentration units identify a concentration state."
      }
    ]
  },
  "title": "Intercellular1995 - Intercellular Calcium Waves Mediated By Diffusio Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model",
      "alias": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model",
      "parameters": {
        "model_path": "data/sneyd_1995.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model_state"
      ],
      "from": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model_summary"
      ],
      "from": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model_trajectory"
      ],
      "from": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model_variable_labels"
      ],
      "from": "physiology_cellml_intercellular_calcium_waves_mediated_by_diffusio_5b5_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Intercellular calcium waves mediated by diffusion of inositol trisphosphate: a two-dimensional model. J. Sneyd, B.T. Wetton, A.C. Charles and M.J. Sanderson, 1995. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}