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Heldt2018 - Budding yeast size control by titration of nuclear sites Lab

About lab

Curated microbiology lab for Heldt2018 - Budding yeast size control by titration of nuclear sites. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.

Runtime

Duration10
Comms Step0.01

Runs

Total0
Completed0
Failed0

Metadata

Packageheldt2018-budding-yeast-size-control-by-titration-of-nuclear-sit
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "total_cln3",
        "maps_to": "heldt2018_budding_yeast_size_control.total_cln3"
      },
      {
        "name": "total_whi5",
        "maps_to": "heldt2018_budding_yeast_size_control.total_whi5"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "heldt2018_budding_yeast_size_control.state"
      },
      {
        "name": "summary",
        "maps_to": "heldt2018_budding_yeast_size_control.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "heldt2018_budding_yeast_size_control.species_labels"
      },
      {
        "name": "titration_module_state",
        "maps_to": "heldt2018_budding_yeast_size_control.titration_module_state"
      },
      {
        "name": "growth_initiation_state",
        "maps_to": "heldt2018_budding_yeast_size_control.growth_initiation_state"
      },
      {
        "name": "growth_division_state",
        "maps_to": "heldt2018_budding_yeast_size_control.growth_division_state"
      },
      {
        "name": "growth_initiation_titration_complex",
        "maps_to": "heldt2018_budding_yeast_size_control.growth_initiation_titration_complex"
      }
    ]
  },
  "title": "Heldt2018 - Budding yeast size control by titration of nuclear sites Lab",
  "models": [
    {
      "path": "owned/models/heldt2018_budding_yeast_size_control",
      "alias": "heldt2018_budding_yeast_size_control",
      "provenance": {
        "owned_path": "owned/models/heldt2018_budding_yeast_size_control"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.heldt2018_budding_yeast_size_control_state"
      ],
      "from": "heldt2018_budding_yeast_size_control.state"
    },
    {
      "to": [
        "visualisation.heldt2018_budding_yeast_size_control_summary"
      ],
      "from": "heldt2018_budding_yeast_size_control.summary"
    },
    {
      "to": [
        "visualisation.heldt2018_budding_yeast_size_control_species_labels"
      ],
      "from": "heldt2018_budding_yeast_size_control.species_labels"
    },
    {
      "to": [
        "visualisation.heldt2018_budding_yeast_size_control_titration_module_state"
      ],
      "from": "heldt2018_budding_yeast_size_control.titration_module_state"
    },
    {
      "to": [
        "visualisation.heldt2018_budding_yeast_size_control_growth_initiation_state"
      ],
      "from": "heldt2018_budding_yeast_size_control.growth_initiation_state"
    },
    {
      "to": [
        "visualisation.heldt2018_budding_yeast_size_control_growth_division_state"
      ],
      "from": "heldt2018_budding_yeast_size_control.growth_division_state"
    },
    {
      "to": [
        "visualisation.heldt2018_budding_yeast_size_control_growth_initiation_titration_complex"
      ],
      "from": "heldt2018_budding_yeast_size_control.growth_initiation_titration_complex"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Heldt2018 - Budding yeast size control by titration of nuclear sites. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}

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