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Dupont1991 - Signal Induced Oscillations Properties Based Induced Lab

About lab

Source-faithful physiology lab for Dupont Berridge Goldbeter 1991. Public controls and outputs are mapped to real source symbols for oscillatory physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagedupont1991-signal-induced-oscillations-properties-based-induced
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cytosol_z",
        "label": "Initial Cytosol Z",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.initial_cytosol_z",
        "description": "Initial value for Cytosol Z. Maps to source symbol `Z`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      },
      {
        "name": "initial_insensitive_pool_y",
        "label": "Initial Insensitive Pool Y",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.initial_insensitive_pool_y",
        "description": "Initial value for Insensitive Pool Y. Maps to source symbol `Y`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.variable_labels"
      },
      {
        "name": "cytosol_z",
        "label": "Cytosol Z",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.cytosol_z",
        "description": "Cytosol Z. Maps to source symbol `Z`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "insensitive_pool_y",
        "label": "Insensitive Pool Y",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.insensitive_pool_y",
        "description": "Insensitive Pool Y. Maps to source symbol `Y`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "beta",
        "label": "Beta",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.beta",
        "description": "Beta. Maps to source symbol `beta`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "parameters_k",
        "label": "Parameters K",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.parameters_k",
        "description": "Parameters K. Maps to source symbol `k`. Units: per_second. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "parameters_k2",
        "label": "Parameters K2",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.parameters_k2",
        "description": "Parameters K2. Maps to source symbol `K2`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "parameters_ka",
        "label": "Parameters Ka",
        "maps_to": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.parameters_ka",
        "description": "Parameters Ka. Maps to source symbol `KA`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Dupont1991 - Signal Induced Oscillations Properties Based Induced Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model",
      "alias": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model",
      "parameters": {
        "model_path": "data/dupont_1991a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model_state"
      ],
      "from": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model_summary"
      ],
      "from": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model_trajectory"
      ],
      "from": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model_variable_labels"
      ],
      "from": "physiology_cellml_dupont_berridge_goldbeter_1991_dupontberridgegoldbeter1991_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Dupont Berridge Goldbeter 1991. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
  "schema_version": "2.0"
}

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