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Firczuk2013 Eukaryotic Translation Lab

About lab

yeast mRNA translation machinery. Firczuk2013 - Eukaryotic mRNA translation machinery This is a model of Saccharomyces cerevisiae mRNA translation which includes the initiation, elongation and termination phases. It can be used to explore generegulation firczuk2013 eukaryotic mrna translation machiner dynamics and compare simulation behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagefirczuk2013-eukaryotic-translation-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "mrna_cap",
        "maps_to": "firczuk2013_eukaryotic_translation.mrna_cap"
      },
      {
        "name": "initiation_complex_43s",
        "maps_to": "firczuk2013_eukaryotic_translation.initiation_complex_43s"
      },
      {
        "name": "eif2_gdp",
        "maps_to": "firczuk2013_eukaryotic_translation.eif2_gdp"
      },
      {
        "name": "eif2b",
        "maps_to": "firczuk2013_eukaryotic_translation.eif2b"
      },
      {
        "name": "state",
        "maps_to": "firczuk2013_eukaryotic_translation.state"
      },
      {
        "name": "summary",
        "maps_to": "firczuk2013_eukaryotic_translation.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "firczuk2013_eukaryotic_translation.species_labels"
      }
    ]
  },
  "title": "Firczuk2013 Eukaryotic Translation Lab",
  "models": [
    {
      "path": "owned/models/firczuk2013_eukaryotic_translation",
      "alias": "firczuk2013_eukaryotic_translation",
      "parameters": {
        "model_path": "data/BIOMD0000000457.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/firczuk2013_eukaryotic_translation"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.firczuk2013_eukaryotic_translation_mrna_cap"
      ],
      "from": "firczuk2013_eukaryotic_translation.mrna_cap"
    },
    {
      "to": [
        "visualisation.firczuk2013_eukaryotic_translation_initiation_complex_43s"
      ],
      "from": "firczuk2013_eukaryotic_translation.initiation_complex_43s"
    },
    {
      "to": [
        "visualisation.firczuk2013_eukaryotic_translation_eif2_gdp"
      ],
      "from": "firczuk2013_eukaryotic_translation.eif2_gdp"
    },
    {
      "to": [
        "visualisation.firczuk2013_eukaryotic_translation_eif2b"
      ],
      "from": "firczuk2013_eukaryotic_translation.eif2b"
    },
    {
      "to": [
        "visualisation.firczuk2013_eukaryotic_translation_state"
      ],
      "from": "firczuk2013_eukaryotic_translation.state"
    },
    {
      "to": [
        "visualisation.firczuk2013_eukaryotic_translation_summary"
      ],
      "from": "firczuk2013_eukaryotic_translation.summary"
    },
    {
      "to": [
        "visualisation.firczuk2013_eukaryotic_translation_species_labels"
      ],
      "from": "firczuk2013_eukaryotic_translation.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "yeast mRNA translation machinery. Firczuk2013 - Eukaryotic mRNA translation machinery This is a model of Saccharomyces cerevisiae mRNA translation which includes the initiation, elongation and termination phases. It can be used to explore generegulation firczuk2013 eukaryotic mrna translation machiner dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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