Sips2015 - Glucose and non-esterified fatty acids (NEFA) metabolism Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_glycolysis_state_1",
        "units": "native SBML value",
        "default": 0.0982882779338853,
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.initial_glycolysis_state_1",
        "description": "Initial condition for glycolysis state 1. Maps to bundled SBML symbol `m_4`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_2",
        "units": "native SBML value",
        "default": 0.245720694834713,
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.initial_glycolysis_state_2",
        "description": "Initial condition for glycolysis state 2. Maps to bundled SBML symbol `m_2`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_3",
        "units": "native SBML value",
        "default": 0.64712,
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.initial_glycolysis_state_3",
        "description": "Initial condition for glycolysis state 3. Maps to bundled SBML symbol `m_6`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_4",
        "units": "native SBML value",
        "default": -1.55,
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.initial_glycolysis_state_4",
        "description": "Initial condition for glycolysis state 4. Maps to bundled SBML symbol `S_b_minus`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_5",
        "units": "native SBML value",
        "default": 2.4642129350853,
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.initial_glycolysis_state_5",
        "description": "Initial condition for glycolysis state 5. Maps to bundled SBML symbol `k_p1`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "glycolysis_state_1",
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.glycolysis_state_1"
      },
      {
        "name": "glycolysis_state_2",
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.glycolysis_state_2"
      },
      {
        "name": "glycolysis_state_3",
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.glycolysis_state_3"
      },
      {
        "name": "glycolysis_state_4",
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.glycolysis_state_4"
      },
      {
        "name": "glycolysis_state_5",
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.glycolysis_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.observable_labels"
      }
    ]
  },
  "title": "Sips2015 - Glucose and non-esterified fatty acids (NEFA) metabolism Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model",
      "alias": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model",
      "parameters": {
        "model_path": "data/MODEL1806080001.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model_observable_values"
      ],
      "from": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model_run_summary"
      ],
      "from": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model_observable_labels"
      ],
      "from": "metabolism_sbml_sips2015_glucose_and_non_esterified_fatty_acids_model1806080001_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This a model from the article: Model-Based Quantification of the Systemic Interplay between Glucose and Fatty Acids in the Postprandial State. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}