About lab
Clean Biosimulant lab for systems signaling model: Hammaren-Geissen2022_PPToP_Model12. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehammaren-geissen2022-pptop-model12-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_pp_new",
"label": "Initial Pp New",
"maps_to": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.initial_pp_new",
"description": "Initial level of Pp New. Maps to SBML symbol `Pp_new`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_pu_new",
"label": "Initial Pu New",
"maps_to": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.initial_pu_new",
"description": "Initial level of Pu New. Maps to SBML symbol `Pu_new`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "pu_old",
"label": "Pu Old",
"maps_to": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.pu_old",
"description": "Pu Old. Maps to SBML symbol `Pu` and is emitted in native SBML units."
},
{
"name": "pp_old",
"label": "Pp Old",
"maps_to": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.pp_old",
"description": "Pp Old. Maps to SBML symbol `Pp` and is emitted in native SBML units."
},
{
"name": "pu_new",
"label": "Pu New",
"maps_to": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.pu_new",
"description": "Pu New. Maps to SBML symbol `Pu_new` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Hammaren-Geissen2022_PPToP_Model12 Lab",
"models": [
{
"path": "owned/models/signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model",
"alias": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model_state"
],
"from": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.state"
},
{
"to": [
"visualisation.signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model_summary"
],
"from": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model_species_labels"
],
"from": "signaling_sbml_hammaren_geissen2022_pptop_model12_biomd0000001078_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Hammaren-Geissen2022_PPToP_Model12. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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