About lab
Source-faithful physiology lab for Karagiannis, Popel, 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagekaragiannis2006-distinct-modes-collagen-type-i-proteolysis-by-ma
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c1_d",
"label": "Initial C1 D",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.initial_c1_d",
"description": "Initial value for C1 D. Maps to source symbol `C1_D`. Units: M. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"M"
]
},
{
"name": "initial_m2_c1",
"label": "Initial M2 C1",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.initial_m2_c1",
"description": "Initial value for M2 C1. Maps to source symbol `M2C1`. Units: M. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"M"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.variable_labels"
},
{
"name": "c1_d",
"label": "C1 D",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.c1_d",
"description": "C1 D. Maps to source symbol `C1_D`. Units: M. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "m2_c1",
"label": "M2 C1",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.m2_c1",
"description": "M2 C1. Maps to source symbol `M2C1`. Units: M. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "m2_p",
"label": "M2 P",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.m2_p",
"description": "M2 P. Maps to source symbol `M2_p`. Units: M. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "m2_t2",
"label": "M2 T2",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.m2_t2",
"description": "M2 T2. Maps to source symbol `M2T2`. Units: M. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "m2_t2_star",
"label": "M2 T2 Star",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.m2_t2_star",
"description": "M2 T2 Star. Maps to source symbol `M2T2_star`. Units: um. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_c1",
"label": "Model C1",
"maps_to": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.model_c1",
"description": "Model C1. Maps to source symbol `C1`. Units: M. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Karagiannis2006 - Distinct Modes Collagen Type I Proteolysis By Matrix Lab",
"models": [
{
"path": "owned/models/physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model",
"alias": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model",
"parameters": {
"model_path": "data/karagiannis_popel_2006.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model_state"
],
"from": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.state"
},
{
"to": [
"visualisation.physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model_summary"
],
"from": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model_trajectory"
],
"from": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model_variable_labels"
],
"from": "physiology_cellml_karagiannis_popel_2006_karagiannispopel2006_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Karagiannis, Popel, 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
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