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Tabak2010 - Mean Field Synaptic Depression Tabakmascagnib Lab

About lab

Source-faithful physiology lab for Tabak, Mascagni and Bertram 2010. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagetabak2010-mean-field-synaptic-depression-tabakmascagnib-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_average_network_activity",
        "label": "Initial Average Network Activity (source a)",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.initial_average_network_activity",
        "description": "Initial value for Average Network Activity (source a). Maps to source symbol `a`. Units: dimensionless. Naming evidence: synaptic-depression mean-field context identifies source symbol a as average activity.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_synaptic_recovery_fraction",
        "label": "Initial Synaptic Recovery Fraction (source s)",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.initial_synaptic_recovery_fraction",
        "description": "Initial value for Synaptic Recovery Fraction (source s). Maps to source symbol `s`. Units: dimensionless. Naming evidence: synaptic-depression mean-field context identifies source symbol s as synaptic recovery.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.variable_labels"
      },
      {
        "name": "average_network_activity",
        "label": "Average Network Activity (source a)",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.average_network_activity",
        "description": "Average Network Activity (source a). Maps to source symbol `a`. Units: dimensionless. Naming evidence: synaptic-depression mean-field context identifies source symbol a as average activity."
      },
      {
        "name": "synaptic_recovery_fraction",
        "label": "Synaptic Recovery Fraction (source s)",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.synaptic_recovery_fraction",
        "description": "Synaptic Recovery Fraction (source s). Maps to source symbol `s`. Units: dimensionless. Naming evidence: synaptic-depression mean-field context identifies source symbol s as synaptic recovery."
      },
      {
        "name": "ainf",
        "label": "Ainf",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.ainf",
        "description": "Ainf. Maps to source symbol `ainf`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameter_ka",
        "label": "Model Parameter Ka (source ka)",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.model_parameter_ka",
        "description": "Model Parameter Ka (source ka). Maps to source symbol `ka`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_parameter_ks",
        "label": "Model Parameter Ks (source ks)",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.model_parameter_ks",
        "description": "Model Parameter Ks (source ks). Maps to source symbol `ks`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_parameter_n",
        "label": "Model Parameter N (source n)",
        "maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.model_parameter_n",
        "description": "Model Parameter N (source n). Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      }
    ]
  },
  "title": "Tabak2010 - Mean Field Synaptic Depression Tabakmascagnib Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model",
      "alias": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model",
      "parameters": {
        "model_path": "data/tabak_mascagni_bertram_2010.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model_state"
      ],
      "from": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model_summary"
      ],
      "from": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model_trajectory"
      ],
      "from": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model_variable_labels"
      ],
      "from": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Tabak, Mascagni and Bertram 2010. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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