About lab
Source-faithful physiology lab for Tabak, Mascagni and Bertram 2010. Public controls and outputs are mapped to real source symbols for source-model physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagetabak2010-mean-field-synaptic-depression-tabakmascagnib-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_average_network_activity",
"label": "Initial Average Network Activity (source a)",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.initial_average_network_activity",
"description": "Initial value for Average Network Activity (source a). Maps to source symbol `a`. Units: dimensionless. Naming evidence: synaptic-depression mean-field context identifies source symbol a as average activity.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_synaptic_recovery_fraction",
"label": "Initial Synaptic Recovery Fraction (source s)",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.initial_synaptic_recovery_fraction",
"description": "Initial value for Synaptic Recovery Fraction (source s). Maps to source symbol `s`. Units: dimensionless. Naming evidence: synaptic-depression mean-field context identifies source symbol s as synaptic recovery.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.variable_labels"
},
{
"name": "average_network_activity",
"label": "Average Network Activity (source a)",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.average_network_activity",
"description": "Average Network Activity (source a). Maps to source symbol `a`. Units: dimensionless. Naming evidence: synaptic-depression mean-field context identifies source symbol a as average activity."
},
{
"name": "synaptic_recovery_fraction",
"label": "Synaptic Recovery Fraction (source s)",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.synaptic_recovery_fraction",
"description": "Synaptic Recovery Fraction (source s). Maps to source symbol `s`. Units: dimensionless. Naming evidence: synaptic-depression mean-field context identifies source symbol s as synaptic recovery."
},
{
"name": "ainf",
"label": "Ainf",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.ainf",
"description": "Ainf. Maps to source symbol `ainf`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_parameter_ka",
"label": "Model Parameter Ka (source ka)",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.model_parameter_ka",
"description": "Model Parameter Ka (source ka). Maps to source symbol `ka`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_parameter_ks",
"label": "Model Parameter Ks (source ks)",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.model_parameter_ks",
"description": "Model Parameter Ks (source ks). Maps to source symbol `ks`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_parameter_n",
"label": "Model Parameter N (source n)",
"maps_to": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.model_parameter_n",
"description": "Model Parameter N (source n). Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
}
]
},
"title": "Tabak2010 - Mean Field Synaptic Depression Tabakmascagnib Lab",
"models": [
{
"path": "owned/models/physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model",
"alias": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model",
"parameters": {
"model_path": "data/tabak_mascagni_bertram_2010.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model_state"
],
"from": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.state"
},
{
"to": [
"visualisation.physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model_summary"
],
"from": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model_trajectory"
],
"from": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model_variable_labels"
],
"from": "physiology_cellml_tabak_mascagni_and_bertram_2010_tabakmascagnibertram2010_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Tabak, Mascagni and Bertram 2010. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
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