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Fridlyand2003 Calcium Flux Lab

About lab

The model reproduces block A of Fig 5 and also Fig 3 (without the inclusion of Tg action). The model was successfully tested on MathSBML To the extent possible under law, all copyright and related or.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagefridlyand2003-calcium-flux-lab
Created2026-05-17
Updated2026-05-17
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cytosolic_adp",
        "label": "Initial Cytosolic ADP",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.initial_cytosolic_adp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ADP_cyt`."
      },
      {
        "name": "initial_cytosolic_atp",
        "label": "Initial Cytosolic ATP",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.initial_cytosolic_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP_cyt`."
      },
      {
        "name": "initial_cytosolic_sodium",
        "label": "Initial Cytosolic Sodium",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.initial_cytosolic_sodium",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Na_cyt`."
      },
      {
        "name": "initial_er_calcium",
        "label": "Initial Er Calcium",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.initial_er_calcium",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_er`."
      },
      {
        "name": "initial_cytosolic_ip3",
        "label": "Initial Cytosolic IP3",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.initial_cytosolic_ip3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `IP3_cyt`."
      },
      {
        "name": "initial_cytosolic_calcium",
        "label": "Initial Cytosolic Calcium",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.initial_cytosolic_calcium",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_cyt`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.species_labels"
      },
      {
        "name": "cytosolic_adp",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.cytosolic_adp"
      },
      {
        "name": "cytosolic_atp",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.cytosolic_atp"
      },
      {
        "name": "cytosolic_sodium",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.cytosolic_sodium"
      },
      {
        "name": "er_calcium",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.er_calcium"
      },
      {
        "name": "cytosolic_ip3",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.cytosolic_ip3"
      },
      {
        "name": "cytosolic_calcium",
        "maps_to": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.cytosolic_calcium"
      }
    ]
  },
  "tags": [
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Fridlyand2003 Calcium Flux Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model",
      "alias": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model_state"
      ],
      "from": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model_summary"
      ],
      "from": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model_species_labels"
      ],
      "from": "systemsbiology_sbml_fridlyand2003_calcium_flux_biomd0000000059_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces block A of Fig 5 and also Fig 3 (without the inclusion of Tg action). The model was successfully tested on MathSBML To the extent possible under law, all copyright and related or.",
  "schema_version": "2.0"
}

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