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Best2009 Homeostatic Mechanisms In Dopamine Synthesis And Release Lab

About lab

Best2009 - Homeostatic mechanisms in dopaminesynthesis and release Encoded non-curated model. Issues: - Initial concentrations for hva, tyrpool, NADPH and NADP are missing - Reaction VMAT requires two.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebest2009-homeostatic-mechanisms-in-dopamine-synthesis-and-releas
Created2026-05-17
Updated2026-05-17
neurosciencesystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_tyrpool",
        "label": "Initial Tyrpool",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_tyrpool",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `tyrpool`."
      },
      {
        "name": "initial_model_state_bh4",
        "label": "Initial Model State BH4",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_model_state_bh4",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `bh4`."
      },
      {
        "name": "initial_model_state_tyr",
        "label": "Initial Model State Tyr",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_model_state_tyr",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `tyr`."
      },
      {
        "name": "initial_btyr",
        "label": "Initial Btyr",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_btyr",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `btyr`."
      },
      {
        "name": "initial_model_state_vda",
        "label": "Initial Model State Vda",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_model_state_vda",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `vda`."
      },
      {
        "name": "initial_model_state_bh2",
        "label": "Initial Model State BH2",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_model_state_bh2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `bh2`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.species_labels"
      },
      {
        "name": "tyrpool",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.tyrpool"
      },
      {
        "name": "bh4",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.bh4"
      },
      {
        "name": "tyr",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.tyr"
      },
      {
        "name": "btyr",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.btyr"
      },
      {
        "name": "vda",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.vda"
      },
      {
        "name": "bh2",
        "maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.bh2"
      }
    ]
  },
  "tags": [
    "neuroscience",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Best2009 Homeostatic Mechanisms In Dopamine Synthesis And Release Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model",
      "alias": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model_state"
      ],
      "from": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model_summary"
      ],
      "from": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Best2009 - Homeostatic mechanisms in dopaminesynthesis and release Encoded non-curated model. Issues: - Initial concentrations for hva, tyrpool, NADPH and NADP are missing - Reaction VMAT requires two.",
  "schema_version": "2.0"
}

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