About lab
Source-faithful physiology lab for FAIR DOs example 4.2. Public controls and outputs are mapped to real source symbols for source-model physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiome-b58-fair-dos-example-4-2-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_q_1",
"label": "Initial Model State Q 1 (source q_1)",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.initial_model_state_q_1",
"description": "Initial value for Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"mole"
]
},
{
"name": "initial_model_state_q_2",
"label": "Initial Model State Q 2 (source q_2)",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.initial_model_state_q_2",
"description": "Initial value for Model State Q 2 (source q_2). Maps to source symbol `q_2`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"mole"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.variable_labels"
},
{
"name": "model_state_q_1",
"label": "Model State Q 1 (source q_1)",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.model_state_q_1",
"description": "Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_q_2",
"label": "Model State Q 2 (source q_2)",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.model_state_q_2",
"description": "Model State Q 2 (source q_2). Maps to source symbol `q_2`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_q_3",
"label": "Model State Q 3 (source q_3)",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.model_state_q_3",
"description": "Model State Q 3 (source q_3). Maps to source symbol `q_3`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_q_4",
"label": "Model State Q 4 (source q_4)",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.model_state_q_4",
"description": "Model State Q 4 (source q_4). Maps to source symbol `q_4`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_q_5",
"label": "Model State Q 5 (source q_5)",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.model_state_q_5",
"description": "Model State Q 5 (source q_5). Maps to source symbol `q_5`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "k_f_1",
"label": "K F 1",
"maps_to": "physiology_cellml_fair_dos_example_4_2_b58_model.k_f_1",
"description": "K F 1. Maps to source symbol `k_f_1`. Units: per_mol_per_s. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome b58 - Fair Dos Example 4 2 Lab",
"models": [
{
"path": "owned/models/physiology_cellml_fair_dos_example_4_2_b58_model",
"alias": "physiology_cellml_fair_dos_example_4_2_b58_model",
"parameters": {
"model_path": "data/FAIRDO_BG_example_4.2.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_fair_dos_example_4_2_b58_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_fair_dos_example_4_2_b58_model_state"
],
"from": "physiology_cellml_fair_dos_example_4_2_b58_model.state"
},
{
"to": [
"visualisation.physiology_cellml_fair_dos_example_4_2_b58_model_summary"
],
"from": "physiology_cellml_fair_dos_example_4_2_b58_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_fair_dos_example_4_2_b58_model_trajectory"
],
"from": "physiology_cellml_fair_dos_example_4_2_b58_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_fair_dos_example_4_2_b58_model_variable_labels"
],
"from": "physiology_cellml_fair_dos_example_4_2_b58_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for FAIR DOs example 4.2. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
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