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Chay1997 - Calciumconcentration Lab

About lab

Source-faithful physiology lab for Chay1997_CalciumConcentration. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagechay1997-calciumconcentration-lab
Created2026-05-23
Updated2026-05-23
physiologysbmlbiomodels_ebifaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_v_membrane",
        "label": "Initial V Membrane",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.initial_v_membrane",
        "description": "Initial value for V Membrane. Maps to source symbol `V_membrane`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "initial_ca_i_cytosolic_calcium",
        "label": "Initial Ca I Cytosolic Calcium",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.initial_ca_i_cytosolic_calcium",
        "description": "Initial value for Ca I Cytosolic Calcium. Maps to source symbol `Ca_i_cytosolic_calcium`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.trajectory"
      },
      {
        "name": "species_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.species_labels"
      },
      {
        "name": "v_membrane",
        "label": "V Membrane",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.v_membrane",
        "description": "V Membrane. Maps to source symbol `V_membrane`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_i_cytosolic_calcium",
        "label": "Ca I Cytosolic Calcium",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.ca_i_cytosolic_calcium",
        "description": "Ca I Cytosolic Calcium. Maps to source symbol `Ca_i_cytosolic_calcium`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_lum",
        "label": "Ca Lum",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.ca_lum",
        "description": "Ca Lum. Maps to source symbol `Ca_lum`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_release_gate_h",
        "label": "Calcium Release Gate H (source h)",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.calcium_release_gate_h",
        "description": "Calcium Release Gate H (source h). Maps to source symbol `h`. Units: native SBML value. Naming evidence: calcium signalling context supports a conservative release-gate label."
      },
      {
        "name": "model_state_d",
        "label": "Model State D (source d)",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.model_state_d",
        "description": "Model State D (source d). Maps to source symbol `d`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_n",
        "label": "Model State N (source n)",
        "maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.model_state_n",
        "description": "Model State N (source n). Maps to source symbol `n`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
      }
    ]
  },
  "title": "Chay1997 - Calciumconcentration Lab",
  "models": [
    {
      "path": "owned/models/physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model",
      "alias": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model",
      "parameters": {
        "model_path": "data/BIOMD0000000378.xml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model_state"
      ],
      "from": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.state"
    },
    {
      "to": [
        "visualisation.physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model_summary"
      ],
      "from": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model_trajectory"
      ],
      "from": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model_species_labels"
      ],
      "from": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Chay1997_CalciumConcentration. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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