About lab
Source-faithful physiology lab for Depaor, Timmons, 1986. Public controls and outputs are mapped to real source symbols for oscillatory physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagedepaor1986-de-paor-timmons-feedback-oscillator-circulatory-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_radius",
"label": "Initial Radius",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.initial_radius",
"description": "Initial value for Radius. Maps to source symbol `r`. Units: dimensionless. Naming evidence: source metadata names `r` as `radius`.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_circulatory_oscillator_state_h",
"label": "Initial Circulatory Oscillator State H (source h)",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.initial_circulatory_oscillator_state_h",
"description": "Initial value for Circulatory Oscillator State H (source h). Maps to source symbol `h`. Units: dimensionless. Naming evidence: circulatory oscillator context supports a conservative oscillator-state label.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.variable_labels"
},
{
"name": "radius",
"label": "Radius",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.radius",
"description": "Radius. Maps to source symbol `r`. Units: dimensionless. Naming evidence: source metadata names `r` as `radius`."
},
{
"name": "circulatory_oscillator_state_h",
"label": "Circulatory Oscillator State H (source h)",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.circulatory_oscillator_state_h",
"description": "Circulatory Oscillator State H (source h). Maps to source symbol `h`. Units: dimensionless. Naming evidence: circulatory oscillator context supports a conservative oscillator-state label."
},
{
"name": "circulatory_oscillator_state_x1",
"label": "Circulatory Oscillator State X1 (source x1)",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.circulatory_oscillator_state_x1",
"description": "Circulatory Oscillator State X1 (source x1). Maps to source symbol `x1`. Units: dimensionless. Naming evidence: circulatory oscillator context supports a conservative oscillator-state label."
},
{
"name": "circulatory_oscillator_state_x2",
"label": "Circulatory Oscillator State X2 (source x2)",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.circulatory_oscillator_state_x2",
"description": "Circulatory Oscillator State X2 (source x2). Maps to source symbol `x2`. Units: dimensionless. Naming evidence: circulatory oscillator context supports a conservative oscillator-state label."
},
{
"name": "circulatory_oscillator_state_x3",
"label": "Circulatory Oscillator State X3 (source x3)",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.circulatory_oscillator_state_x3",
"description": "Circulatory Oscillator State X3 (source x3). Maps to source symbol `x3`. Units: dimensionless. Naming evidence: circulatory oscillator context supports a conservative oscillator-state label."
},
{
"name": "alpha",
"label": "Alpha",
"maps_to": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.alpha",
"description": "Alpha. Maps to source symbol `alpha`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Depaor1986 - De Paor Timmons Feedback Oscillator Circulatory Lab",
"models": [
{
"path": "owned/models/physiology_cellml_depaor_timmons_1986_depaortimmons1986_model",
"alias": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model",
"parameters": {
"model_path": "data/depaor_timmons_1986.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_depaor_timmons_1986_depaortimmons1986_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_depaor_timmons_1986_depaortimmons1986_model_state"
],
"from": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.state"
},
{
"to": [
"visualisation.physiology_cellml_depaor_timmons_1986_depaortimmons1986_model_summary"
],
"from": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_depaor_timmons_1986_depaortimmons1986_model_trajectory"
],
"from": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_depaor_timmons_1986_depaortimmons1986_model_variable_labels"
],
"from": "physiology_cellml_depaor_timmons_1986_depaortimmons1986_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Depaor, Timmons, 1986. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
"schema_version": "2.0"
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