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Barrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release Lab

About lab

Single-model lab wrapper for Barrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release. Barrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release This model is designed based on the hypothesis that cytoplasmic calcium accelerates entry into S phase of the cell cycle and/. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagebarrack2014-calcium-cell-cycle-coupling-cyclin-d-dependent-atp-r
Created2026-05-15
Updated2026-05-15
cellcyclesbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "model_state_d",
        "label": "Model state D",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_d",
        "description": "Tracks Model state D in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_d`."
      },
      {
        "name": "model_state_ad",
        "label": "Model state Ad",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_ad",
        "description": "Tracks Model state Ad in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_ad`."
      },
      {
        "name": "model_state_e",
        "label": "Model state E",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_e",
        "description": "Tracks Model state E in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_e`."
      },
      {
        "name": "model_state_r_r",
        "label": "Model state R (r)",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_r_r",
        "description": "Tracks Model state R (r) in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_r_r`."
      },
      {
        "name": "model_state_rs",
        "label": "Model state Rs",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_rs",
        "description": "Tracks Model state Rs in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_rs`."
      },
      {
        "name": "model_state_x_x",
        "label": "Model state X (x)",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_x_x",
        "description": "Tracks Model state X (x) in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_x_x`."
      },
      {
        "name": "ip3",
        "label": "IP3",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.ip3",
        "description": "Tracks IP3 in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.ip3`."
      },
      {
        "name": "model_state_kg",
        "label": "Model state Kg",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_kg",
        "description": "Tracks Model state Kg in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_kg`."
      },
      {
        "name": "gstar",
        "label": "Gstar",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.gstar",
        "description": "Tracks Gstar in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.gstar`."
      },
      {
        "name": "model_state_ro",
        "label": "Model state Ro",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_ro",
        "description": "Tracks Model state Ro in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_ro`."
      },
      {
        "name": "ip3con",
        "label": "Ip3con",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.ip3con",
        "description": "Tracks Ip3con in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.ip3con`."
      },
      {
        "name": "dcon",
        "label": "Dcon",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.dcon",
        "description": "Tracks Dcon in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.dcon`."
      },
      {
        "name": "atp",
        "label": "ATP",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.atp",
        "description": "Tracks ATP in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.atp`."
      },
      {
        "name": "model_state_y_y",
        "label": "Model state Y (y)",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_y_y",
        "description": "Tracks Model state Y (y) in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.model_state_y_y`."
      },
      {
        "name": "delta",
        "label": "Delta",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.delta",
        "description": "Tracks Delta in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.delta`."
      },
      {
        "name": "calcium",
        "label": "Calcium",
        "maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.calcium",
        "description": "Tracks Calcium in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.calcium`."
      }
    ]
  },
  "title": "Barrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release Lab",
  "models": [
    {
      "path": "owned/models/cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model",
      "alias": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model",
      "provenance": {
        "owned_path": "owned/models/cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model_state"
      ],
      "from": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.state"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model_summary"
      ],
      "from": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.summary"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model_species_labels"
      ],
      "from": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_cyclin_d_biomd0000000508_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Single-model lab wrapper for Barrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release. Barrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release This model is designed based on the hypothesis that cytoplasmic calcium accelerates entry into S phase of the cell cycle and/. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.",
  "schema_version": "2.0"
}

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