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Somogyi1990 - Calcium Oscillations Lab

About lab

Source-faithful physiology lab for Somogyi1990_CaOscillations. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagesomogyi1990-calcium-oscillations-lab
Created2026-05-23
Updated2026-05-23
physiologysbmlbiomodels_ebifaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ca_cyt",
        "label": "Initial Ca Cyt",
        "maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.initial_ca_cyt",
        "description": "Initial value for Ca Cyt. Maps to source symbol `y`. Units: native SBML value. Naming evidence: source metadata names `y` as `Ca_Cyt`."
      },
      {
        "name": "initial_ca_er",
        "label": "Initial Ca Er",
        "maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.initial_ca_er",
        "description": "Initial value for Ca Er. Maps to source symbol `x`. Units: native SBML value. Naming evidence: source metadata names `x` as `Ca_ER`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.trajectory"
      },
      {
        "name": "species_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.species_labels"
      },
      {
        "name": "ca_cyt",
        "label": "Ca Cyt",
        "maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.ca_cyt",
        "description": "Ca Cyt. Maps to source symbol `y`. Units: native SBML value. Naming evidence: source metadata names `y` as `Ca_Cyt`."
      },
      {
        "name": "ca_er",
        "label": "Ca Er",
        "maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.ca_er",
        "description": "Ca Er. Maps to source symbol `x`. Units: native SBML value. Naming evidence: source metadata names `x` as `Ca_ER`."
      }
    ]
  },
  "title": "Somogyi1990 - Calcium Oscillations Lab",
  "models": [
    {
      "path": "owned/models/physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model",
      "alias": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model",
      "parameters": {
        "model_path": "data/BIOMD0000000114.xml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model_state"
      ],
      "from": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.state"
    },
    {
      "to": [
        "visualisation.physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model_summary"
      ],
      "from": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model_trajectory"
      ],
      "from": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model_species_labels"
      ],
      "from": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Somogyi1990_CaOscillations. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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