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Goodwin1965 - Oscillatory Behavior Enzymatic Control Processes 1 Lab

About lab

Source-faithful physiology lab for Goodwin, 1965. Public controls and outputs are mapped to real source symbols for oscillatory physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagegoodwin1965-oscillatory-behavior-enzymatic-control-processes-1-l
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_concentration_of_m_rna_of_the_ith_species",
        "label": "Initial Concentration Of M RNA Of The Ith Species",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.initial_concentration_of_m_rna_of_the_ith_species",
        "description": "Initial value for Concentration Of M RNA Of The Ith Species. Maps to source symbol `Xi`. Units: nanomolar. Naming evidence: source metadata names `Xi` as `concentration of mRNA of the ith species`.",
        "accepted_units": [
          "nanomolar"
        ]
      },
      {
        "name": "initial_concentration_of_protein_of_the_ith_species",
        "label": "Initial Concentration Of Protein Of The Ith Species",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.initial_concentration_of_protein_of_the_ith_species",
        "description": "Initial value for Concentration Of Protein Of The Ith Species. Maps to source symbol `Yi`. Units: nanomolar. Naming evidence: source metadata names `Yi` as `concentration of protein of the ith species`.",
        "accepted_units": [
          "nanomolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.variable_labels"
      },
      {
        "name": "intracellular_potassium_concentration",
        "label": "Intracellular Potassium Concentration",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.intracellular_potassium_concentration",
        "description": "Intracellular Potassium Concentration. Maps to source symbol `ki`. Units: per_nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "concentration_of_m_rna_of_the_ith_species",
        "label": "Concentration Of M RNA Of The Ith Species",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.concentration_of_m_rna_of_the_ith_species",
        "description": "Concentration Of M RNA Of The Ith Species. Maps to source symbol `Xi`. Units: nanomolar. Naming evidence: source metadata names `Xi` as `concentration of mRNA of the ith species`."
      },
      {
        "name": "concentration_of_protein_of_the_ith_species",
        "label": "Concentration Of Protein Of The Ith Species",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.concentration_of_protein_of_the_ith_species",
        "description": "Concentration Of Protein Of The Ith Species. Maps to source symbol `Yi`. Units: nanomolar. Naming evidence: source metadata names `Yi` as `concentration of protein of the ith species`."
      },
      {
        "name": "alpha_i",
        "label": "Alpha I",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.alpha_i",
        "description": "Alpha I. Maps to source symbol `alpha_i`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "beta_i",
        "label": "Beta I",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.beta_i",
        "description": "Beta I. Maps to source symbol `beta_i`. Units: flux. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "xi_ai",
        "label": "Xi Ai",
        "maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.xi_ai",
        "description": "Xi Ai. Maps to source symbol `Ai`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Goodwin1965 - Oscillatory Behavior Enzymatic Control Processes 1 Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_goodwin_1965_goodwin1965_model",
      "alias": "physiology_cellml_goodwin_1965_goodwin1965_model",
      "parameters": {
        "model_path": "data/goodwin_1965_a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_goodwin_1965_goodwin1965_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_goodwin_1965_goodwin1965_model_state"
      ],
      "from": "physiology_cellml_goodwin_1965_goodwin1965_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_goodwin_1965_goodwin1965_model_summary"
      ],
      "from": "physiology_cellml_goodwin_1965_goodwin1965_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_goodwin_1965_goodwin1965_model_trajectory"
      ],
      "from": "physiology_cellml_goodwin_1965_goodwin1965_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_goodwin_1965_goodwin1965_model_variable_labels"
      ],
      "from": "physiology_cellml_goodwin_1965_goodwin1965_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Goodwin, 1965. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
  "schema_version": "2.0"
}

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