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Physiome 295 - Na Hco3 Cotransporter Lab

About lab

Source-faithful physiology lab for Na+/HCO3- Cotransporter. Public controls and outputs are mapped to real source symbols for transport physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-295-na-hco3-cotransporter-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_na_int",
        "label": "Initial Na Int",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.initial_na_int",
        "description": "Initial value for Na Int. Maps to source symbol `Na_int`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mM"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.variable_labels"
      },
      {
        "name": "na_int",
        "label": "Na Int",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.na_int",
        "description": "Na Int. Maps to source symbol `Na_int`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "eps",
        "label": "Eps",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.eps",
        "description": "Eps. Maps to source symbol `eps`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "hco3_ext",
        "label": "Hco3 Ext",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.hco3_ext",
        "description": "Hco3 Ext. Maps to source symbol `HCO3_ext`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "hco3_int",
        "label": "Hco3 Int",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.hco3_int",
        "description": "Hco3 Int. Maps to source symbol `HCO3_int`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "j_nbc_hco3",
        "label": "J Nbc Hco3",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.j_nbc_hco3",
        "description": "J Nbc Hco3. Maps to source symbol `J_NBC_HCO3`. Units: umol_per_s_per_cm2_1. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "j_nbc_na",
        "label": "J Nbc Na",
        "maps_to": "physiology_cellml_na_hco3_cotransporter_295_model.j_nbc_na",
        "description": "J Nbc Na. Maps to source symbol `J_NBC_Na`. Units: umol_per_s_per_cm2_1. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 295 - Na Hco3 Cotransporter Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_na_hco3_cotransporter_295_model",
      "alias": "physiology_cellml_na_hco3_cotransporter_295_model",
      "parameters": {
        "model_path": "data/NBC_test.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_na_hco3_cotransporter_295_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_na_hco3_cotransporter_295_model_state"
      ],
      "from": "physiology_cellml_na_hco3_cotransporter_295_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_na_hco3_cotransporter_295_model_summary"
      ],
      "from": "physiology_cellml_na_hco3_cotransporter_295_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_na_hco3_cotransporter_295_model_trajectory"
      ],
      "from": "physiology_cellml_na_hco3_cotransporter_295_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_na_hco3_cotransporter_295_model_variable_labels"
      ],
      "from": "physiology_cellml_na_hco3_cotransporter_295_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Na+/HCO3- Cotransporter. Public controls and outputs are mapped to real source symbols for transport physiology.",
  "schema_version": "2.0"
}

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