About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebhalla2004-egfr-mapk-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkegfrneurosciencevisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_beta_response_parameter_gamma",
"label": "Initial beta response parameter Gamma",
"maps_to": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.initial_beta_response_parameter_gamma",
"description": "Initial level of beta response parameter Gamma. Maps to SBML symbol `BetaGamma`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_calcium_m_ca4",
"label": "Initial calcium M Ca4",
"maps_to": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.initial_calcium_m_ca4",
"description": "Initial level of calcium M Ca4. Maps to SBML symbol `CaM_minus_Ca4`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_egfr_egf",
"label": "Initial EGFR EGF",
"maps_to": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.initial_egfr_egf",
"description": "Initial level of EGFR EGF. Maps to SBML symbol `EGFR_slash_EGF`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "pkc_active_pkc_act_raf_pkc_act_raf_cplx",
"label": "PKC active PKC Act RAF PKC Act RAF Cplx",
"maps_to": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.pkc_active_pkc_act_raf_pkc_act_raf_cplx",
"description": "PKC active PKC Act RAF PKC Act RAF Cplx. Maps to SBML symbol `PKC_minus_active_slash_PKC_minus_act_minus_raf_slash_PKC_minus_act_minus_raf_cplx` and is emitted in native SBML units."
},
{
"name": "pkc_active_pkc_inact_gap_pkc_inact_gap_cplx",
"label": "PKC active PKC Inact GAP PKC Inact GAP Cplx",
"maps_to": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.pkc_active_pkc_inact_gap_pkc_inact_gap_cplx",
"description": "PKC active PKC Inact GAP PKC Inact GAP Cplx. Maps to SBML symbol `PKC_minus_active_slash_PKC_minus_inact_minus_GAP_slash_PKC_minus_inact_minus_GAP_cplx` and is emitted in native SBML units."
},
{
"name": "pkc_active_pkc_act_gef_pkc_act_gef_cplx",
"label": "PKC active PKC Act GEF PKC Act GEF Cplx",
"maps_to": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.pkc_active_pkc_act_gef_pkc_act_gef_cplx",
"description": "PKC active PKC Act GEF PKC Act GEF Cplx. Maps to SBML symbol `PKC_minus_active_slash_PKC_minus_act_minus_GEF_slash_PKC_minus_act_minus_GEF_cplx` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk",
"egfr",
"neuroscience"
],
"title": "Bhalla2004_EGFR_MAPK Lab",
"models": [
{
"path": "owned/models/signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model",
"alias": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model_state"
],
"from": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.state"
},
{
"to": [
"visualisation.signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model_summary"
],
"from": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model_species_labels"
],
"from": "signaling_sbml_bhalla2004_egfr_mapk_model9085850385_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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