Cloutier2009_EnergyMetabolism_ModelF Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_fructose_6_phosphate",
        "units": "native SBML value",
        "default": 0.2,
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.initial_fructose_6_phosphate",
        "description": "Initial condition for fructose 6 phosphate. Maps to bundled SBML symbol `F6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_2_6_bisphosphate",
        "units": "native SBML value",
        "default": 0.001,
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.initial_fructose_2_6_bisphosphate",
        "description": "Initial condition for fructose 2 6 bisphosphate. Maps to bundled SBML symbol `F26P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glyceraldehyde_3_phosphate",
        "units": "native SBML value",
        "default": 0.0405,
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.initial_glyceraldehyde_3_phosphate",
        "description": "Initial condition for glyceraldehyde 3 phosphate. Maps to bundled SBML symbol `GAP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_pyruvate",
        "units": "native SBML value",
        "default": 0.1,
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.initial_pyruvate",
        "description": "Initial condition for pyruvate. Maps to bundled SBML symbol `PYR`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_lactate",
        "units": "native SBML value",
        "default": 0.5,
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.initial_lactate",
        "description": "Initial condition for lactate. Maps to bundled SBML symbol `LAC`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "fructose_6_phosphate",
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.fructose_6_phosphate"
      },
      {
        "name": "fructose_2_6_bisphosphate",
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.fructose_2_6_bisphosphate"
      },
      {
        "name": "glyceraldehyde_3_phosphate",
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.glyceraldehyde_3_phosphate"
      },
      {
        "name": "pyruvate",
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.pyruvate"
      },
      {
        "name": "lactate",
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.lactate"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.observable_labels"
      }
    ]
  },
  "title": "Cloutier2009_EnergyMetabolism_ModelF Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model",
      "parameters": {
        "model_path": "data/MODEL1006230096.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model_observable_values"
      ],
      "from": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model_run_summary"
      ],
      "from": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model_observable_labels"
      ],
      "from": "metabolism_sbml_cloutier2009_energymetabolism_modelf_model1006230096_model.observable_labels"
    }
  ],
  "package": "cloutier2009-energymetabolism-modelf",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "This a model from the article: The control systems structures of energy metabolism. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}