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Kaiser2014 - Salmonella persistence after ciprofloxacin treatment Lab

About lab

Curated microbiology lab for Kaiser2014 - Salmonella persistence after ciprofloxacin treatment. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.

Runtime

Duration10
Comms Step0.01

Runs

Total0
Completed0
Failed0

Metadata

Packagekaiser2014-salmonella-persistence-after-ciprofloxacin-treatment
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_persistent_salmonella_load",
        "maps_to": "kaiser2014_salmonella_persistence.initial_persistent_salmonella_load"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "kaiser2014_salmonella_persistence.state"
      },
      {
        "name": "summary",
        "maps_to": "kaiser2014_salmonella_persistence.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "kaiser2014_salmonella_persistence.species_labels"
      },
      {
        "name": "persistent_salmonella_load",
        "maps_to": "kaiser2014_salmonella_persistence.persistent_salmonella_load"
      }
    ]
  },
  "title": "Kaiser2014 - Salmonella persistence after ciprofloxacin treatment Lab",
  "models": [
    {
      "path": "owned/models/kaiser2014_salmonella_persistence",
      "alias": "kaiser2014_salmonella_persistence",
      "provenance": {
        "owned_path": "owned/models/kaiser2014_salmonella_persistence"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.kaiser2014_salmonella_persistence_state"
      ],
      "from": "kaiser2014_salmonella_persistence.state"
    },
    {
      "to": [
        "visualisation.kaiser2014_salmonella_persistence_summary"
      ],
      "from": "kaiser2014_salmonella_persistence.summary"
    },
    {
      "to": [
        "visualisation.kaiser2014_salmonella_persistence_species_labels"
      ],
      "from": "kaiser2014_salmonella_persistence.species_labels"
    },
    {
      "to": [
        "visualisation.kaiser2014_salmonella_persistence_persistent_salmonella_load"
      ],
      "from": "kaiser2014_salmonella_persistence.persistent_salmonella_load"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Kaiser2014 - Salmonella persistence after ciprofloxacin treatment. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}

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