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Salazar2009 Photoperiodicregulation Lab

About lab

This a model from the article: Prediction of photoperiodic regulators from quantitative gene circuit models. Salazar JD, Saithong T, Brown PE, Foreman J, Locke JC, Halliday KJ, Carré IA, Rand DA, Mill.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagesalazar2009-photoperiodicregulation-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "light_amplitude",
        "label": "Light Amplitude",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.light_amplitude",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `lightAmplitude`."
      },
      {
        "name": "light_offset",
        "label": "Light Offset",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.light_offset",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `lightOffset`."
      },
      {
        "name": "twilight_period",
        "label": "Twilight Period",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.twilight_period",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `twilightPeriod`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.species_labels"
      },
      {
        "name": "c_tc",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.c_tc"
      },
      {
        "name": "c_xc",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.c_xc"
      },
      {
        "name": "c_pn",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.c_pn"
      },
      {
        "name": "c_lm",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.c_lm"
      },
      {
        "name": "c_tm",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.c_tm"
      },
      {
        "name": "c_xn",
        "maps_to": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.c_xn"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Salazar2009 Photoperiodicregulation Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model",
      "alias": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model_state"
      ],
      "from": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model_summary"
      ],
      "from": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_salazar2009_photoperiodicregulation_model1005050000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Prediction of photoperiodic regulators from quantitative gene circuit models. Salazar JD, Saithong T, Brown PE, Foreman J, Locke JC, Halliday KJ, Carré IA, Rand DA, Mill.",
  "schema_version": "2.0"
}

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