About lab
This model describes the concept of Cancer Stem Cells(CSC) differentiation and tumor-immune interaction into a generic model that has been validated with known experimental data. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageganguli2018-immuno-regulatory-mechanisms-in-tumor-microenvironme
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cancer_stem_cells_s",
"label": "Initial Cancer Stem Cells S",
"units": "native source value",
"default": 1,
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.initial_cancer_stem_cells_s",
"description": "Initial Cancer Stem Cells S. Sets the initial value of bundled SBML species `Cancer_Stem_Cells_S`."
},
{
"name": "initial_cancer_cells_c",
"label": "Initial Cancer Cells C",
"units": "native source value",
"default": 0,
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.initial_cancer_cells_c",
"description": "Initial Cancer Cells C. Sets the initial value of bundled SBML species `Cancer_Cells_C`."
},
{
"name": "initial_resistant_cancer_cells_c_r",
"label": "Initial Resistant Cancer Cells C R",
"units": "native source value",
"default": 0,
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.initial_resistant_cancer_cells_c_r",
"description": "Initial Resistant Cancer Cells C R. Sets the initial value of bundled SBML species `Resistant_Cancer_Cells_C_R`."
},
{
"name": "initial_unresolved_tumor_observable_1",
"label": "Initial Unresolved Tumor Observable 1",
"units": "native source value",
"default": 85000,
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.initial_unresolved_tumor_observable_1",
"description": "Initial Unresolved Tumor Observable 1. Sets the initial value of bundled SBML species `M1_Tumor_Associated_Macrophages`."
},
{
"name": "initial_unresolved_tumor_observable_2",
"label": "Initial Unresolved Tumor Observable 2",
"units": "native source value",
"default": 15000,
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.initial_unresolved_tumor_observable_2",
"description": "Initial Unresolved Tumor Observable 2. Sets the initial value of bundled SBML species `M2_Tumor_Associated_Macrophages`."
},
{
"name": "gompertzian_growth_of_cancer_cells_c_rate",
"label": "Gompertzian Growth Of Cancer Cells C Rate",
"units": "native source value",
"default": 0.0001,
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.gompertzian_growth_of_cancer_cells_c_rate",
"description": "Gompertzian Growth Of Cancer Cells C Rate. Sets bundled SBML parameter `r_1`."
},
{
"name": "gompertzian_growth_of_resistant_cancer_cells_cr_rate",
"label": "Gompertzian Growth Of Resistant Cancer Cells Cr Rate",
"units": "native source value",
"default": 0.00001,
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.gompertzian_growth_of_resistant_cancer_cells_cr_rate",
"description": "Gompertzian Growth Of Resistant Cancer Cells Cr Rate. Sets bundled SBML parameter `r_2`."
},
{
"name": "proliferation_on_cancer_cells_c_interleukin_10_rate",
"label": "Proliferation On Cancer Cells C Interleukin 10 Rate",
"units": "unit_2",
"default": 2.0531,
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.proliferation_on_cancer_cells_c_interleukin_10_rate",
"description": "Proliferation On Cancer Cells C Interleukin 10 Rate. Sets bundled SBML parameter `k3`."
},
{
"name": "proliferation_on_resistant_cancer_cells_cr_interleukin_10_rate",
"label": "Proliferation On Resistant Cancer Cells Cr Interleukin 10 Rate",
"units": "unit_2",
"default": 6.7979,
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.proliferation_on_resistant_cancer_cells_cr_interleukin_10_rate",
"description": "Proliferation On Resistant Cancer Cells Cr Interleukin 10 Rate. Sets bundled SBML parameter `k5`."
}
],
"outputs": [
{
"name": "cancer_stem_cells_s",
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.cancer_stem_cells_s"
},
{
"name": "cancer_cells_c",
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.cancer_cells_c"
},
{
"name": "resistant_cancer_cells_c_r",
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.resistant_cancer_cells_c_r"
},
{
"name": "unresolved_tumor_observable_1",
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.unresolved_tumor_observable_1"
},
{
"name": "unresolved_tumor_observable_2",
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.unresolved_tumor_observable_2"
},
{
"name": "state",
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.state"
},
{
"name": "summary",
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.summary"
},
{
"name": "species_labels",
"maps_to": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.species_labels"
}
]
},
"title": "Ganguli2018-immuno regulatory mechanisms in tumor microenvironment Lab",
"models": [
{
"path": "owned/models/immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model",
"alias": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model",
"provenance": {
"owned_path": "owned/models/immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model_state"
],
"from": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.state"
},
{
"to": [
"visualisation.immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model_summary"
],
"from": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.summary"
},
{
"to": [
"visualisation.immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model_species_labels"
],
"from": "immunology_sbml_ganguli2018_immuno_regulatory_mechanisms_in_tumo_biomd0000000810_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "This model describes the concept of Cancer Stem Cells(CSC) differentiation and tumor-immune interaction into a generic model that has been validated with known experimental data. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
"schema_version": "2.0"
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