About lab
Clean Biosimulant lab for systems signaling model: PetelenzKuehn_osmoadaptation_hog1D. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagepetelenzkuehn-osmoadaptation-hog1d-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebistress-responsevisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_t_stress_level",
"label": "T Stress",
"maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.initial_t_stress_level",
"description": "T Stress source parameter. Maps to SBML symbol `t_stress` and preserves the bundled default."
},
{
"name": "initial_glucose_e",
"label": "Initial Glucose E",
"maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.initial_glucose_e",
"description": "Initial level of Glucose E. Maps to SBML symbol `glucose_e`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_glucose_i",
"label": "Initial Glucose I",
"maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.initial_glucose_i",
"description": "Initial level of Glucose I. Maps to SBML symbol `glucose_i`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "glycerol_i",
"label": "Glycerol I",
"maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.glycerol_i",
"description": "Glycerol I. Maps to SBML symbol `glycerol_i` and is emitted in native SBML units."
},
{
"name": "intracellular_concentration_input",
"label": "intracellular concentration input",
"maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.intracellular_concentration_input",
"description": "intracellular concentration input. Maps to SBML symbol `cin` and is emitted in native SBML units."
},
{
"name": "glucose_i",
"label": "Glucose I",
"maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.glucose_i",
"description": "Glucose I. Maps to SBML symbol `glucose_i` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"stress-response"
],
"title": "PetelenzKuehn_osmoadaptation_hog1D Lab",
"models": [
{
"path": "owned/models/signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model",
"alias": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model_state"
],
"from": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.state"
},
{
"to": [
"visualisation.signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model_summary"
],
"from": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model_species_labels"
],
"from": "signaling_sbml_petelenzkuehn_osmoadaptation_hog1d_biomd0000000606_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: PetelenzKuehn_osmoadaptation_hog1D. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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