Almeida2019 - Transcription-based circadian mechanism controls the duration of molecular clock states in response to signaling inputs Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_source_defined_bmal1_state",
        "label": "Initial source-defined BMAL1 state",
        "maps_to": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model.initial_source_defined_bmal1_state",
        "description": "Initial level of source-defined BMAL1 state. Maps to SBML symbol `BMAL1`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "source_defined_bmal1_state",
        "label": "source-defined BMAL1 state",
        "maps_to": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model.source_defined_bmal1_state",
        "description": "source-defined BMAL1 state. Maps to SBML symbol `BMAL1` and is emitted in native SBML units."
      },
      {
        "name": "source_defined_ror_state",
        "label": "source-defined ROR state",
        "maps_to": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model.source_defined_ror_state",
        "description": "source-defined ROR state. Maps to SBML symbol `ROR` and is emitted in native SBML units."
      },
      {
        "name": "source_defined_rev_state",
        "label": "source-defined REV state",
        "maps_to": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model.source_defined_rev_state",
        "description": "source-defined REV state. Maps to SBML symbol `REV` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "circadian"
  ],
  "title": "Almeida2019 - Transcription-based circadian mechanism controls the duration of molecular clock states in response to signaling inputs Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model",
      "alias": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model_state"
      ],
      "from": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model_summary"
      ],
      "from": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model_species_labels"
      ],
      "from": "signaling_sbml_almeida2019_transcription_based_circadian_mechan_biomd0000000839_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for circadian regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}