About lab
This is a quantitative systems pharmacology (QSP) model that describes key elements of the cancer immunity cycle and the tumor microenvironment, tumor growth, as well as dose-exposure-target modulatio. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagekosinsky2018-radiation-and-pd-l-1-treatment-combinations-lab
Created2026-05-16
Updated2026-05-16
biomodels_ebicurateddrug-responsefaithfuloncologypharmacologyphysiologyradiotherapysbmlsystemsbiologytumor-growthvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "radiation_dose_source_parameter",
"label": "Radiation Dose source parameter",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.radiation_dose_source_parameter",
"description": "Radiation Dose source parameter. Maps to bundled SBML parameter `radiation_Dose`."
},
{
"name": "initial_dsb",
"label": "DSB",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.initial_dsb",
"description": "Initial DSB. Sets the initial value of bundled SBML symbol `U`."
},
{
"name": "initial_pd_l1",
"label": "PDL1",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.initial_pd_l1",
"description": "Initial PDL1. Sets the initial value of bundled SBML symbol `PDL1`."
},
{
"name": "initial_tvd",
"label": "TVD",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.initial_tvd",
"description": "Initial TVD. Sets the initial value of bundled SBML symbol `TVd`."
},
{
"name": "initial_tc_nd",
"label": "TC ND",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.initial_tc_nd",
"description": "Initial TC ND. Sets the initial value of bundled SBML symbol `nTeff`."
},
{
"name": "initial_tc_d",
"label": "TC D",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.initial_tc_d",
"description": "Initial TC D. Sets the initial value of bundled SBML symbol `dTeff`."
}
],
"outputs": [
{
"name": "tv",
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.tv",
"description": "TV observable. Maps to SBML symbol `TV`."
},
{
"name": "dsb",
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.dsb",
"description": "DSB observable. Maps to SBML symbol `U`."
},
{
"name": "pd_l1",
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.pd_l1",
"description": "PDL1 observable. Maps to SBML symbol `PDL1`."
},
{
"name": "tvd",
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.tvd",
"description": "TVD observable. Maps to SBML symbol `TVd`."
},
{
"name": "tc_nd",
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.tc_nd",
"description": "TC ND observable. Maps to SBML symbol `nTeff`."
},
{
"name": "tc_d",
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.tc_d",
"description": "TC D observable. Maps to SBML symbol `dTeff`."
},
{
"name": "state",
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"biomodels_ebi",
"curated",
"drug-response",
"faithful",
"oncology",
"pharmacology",
"physiology",
"radiotherapy",
"sbml",
"systemsbiology",
"tumor-growth"
],
"title": "Kosinsky2018 - Radiation and PD-(L)1 treatment combinations Lab",
"models": [
{
"path": "owned/models/oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model",
"alias": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model",
"provenance": {
"owned_path": "owned/models/oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model_state"
],
"from": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.state"
},
{
"to": [
"visualisation.oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model_summary"
],
"from": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model_species_labels"
],
"from": "oncology_sbml_kosinsky2018_radiation_and_pd_l_1_treatment_comb_biomd0000000863_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "This is a quantitative systems pharmacology (QSP) model that describes key elements of the cancer immunity cycle and the tumor microenvironment, tumor growth, as well as dose-exposure-target modulatio. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.",
"schema_version": "2.0"
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