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Chassagnole2002 Carbon Metabolism Lab

About lab

The model reproduces Figures 4,5 and 6 of the publication. The analytical functions for cometabolites Catp, Camp, Cnadph, and Cnadp slightly differ from the equations given in the paper.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagechassagnole2002-carbon-metabolism-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "cfeed",
        "label": "Cfeed",
        "maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.cfeed",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `cfeed`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.species_labels"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.glucose_6_phosphate"
      },
      {
        "name": "pyruvate",
        "maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.pyruvate"
      },
      {
        "name": "phosphoenol_pyruvate",
        "maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.phosphoenol_pyruvate"
      },
      {
        "name": "model_state_3_phosphoglycerate",
        "maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.model_state_3_phosphoglycerate"
      },
      {
        "name": "extracellular_glucose",
        "maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.extracellular_glucose"
      },
      {
        "name": "model_state_6_phosphogluconate",
        "maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.model_state_6_phosphogluconate"
      }
    ]
  },
  "tags": [
    "metabolism",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Chassagnole2002 Carbon Metabolism Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model",
      "alias": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model_state"
      ],
      "from": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model_summary"
      ],
      "from": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model_species_labels"
      ],
      "from": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces Figures 4,5 and 6 of the publication. The analytical functions for cometabolites Catp, Camp, Cnadph, and Cnadp slightly differ from the equations given in the paper.",
  "schema_version": "2.0"
}

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