About lab
The model reproduces Figures 4,5 and 6 of the publication. The analytical functions for cometabolites Catp, Camp, Cnadph, and Cnadp slightly differ from the equations given in the paper.
Runtime
Duration1
Comms Step0.1
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Metadata
Packagechassagnole2002-carbon-metabolism-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "cfeed",
"label": "Cfeed",
"maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.cfeed",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `cfeed`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.species_labels"
},
{
"name": "glucose_6_phosphate",
"maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.glucose_6_phosphate"
},
{
"name": "pyruvate",
"maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.pyruvate"
},
{
"name": "phosphoenol_pyruvate",
"maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.phosphoenol_pyruvate"
},
{
"name": "model_state_3_phosphoglycerate",
"maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.model_state_3_phosphoglycerate"
},
{
"name": "extracellular_glucose",
"maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.extracellular_glucose"
},
{
"name": "model_state_6_phosphogluconate",
"maps_to": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.model_state_6_phosphogluconate"
}
]
},
"tags": [
"metabolism",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Chassagnole2002 Carbon Metabolism Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model",
"alias": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
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],
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},
{
"to": [
"visualisation.systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model_summary"
],
"from": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model_species_labels"
],
"from": "systemsbiology_sbml_chassagnole2002_carbon_metabolism_biomd0000000051_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "The model reproduces Figures 4,5 and 6 of the publication. The analytical functions for cometabolites Catp, Camp, Cnadph, and Cnadp slightly differ from the equations given in the paper.",
"schema_version": "2.0"
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